SHOGUN

o+SHOGUN Project Documentation

o*Todo List

o+Class List

|o*CAlphabet

|o*CArray< T >

|o*CArray2< T >

|o*CArray3< T >

|o*CAttributeFeatures

|o*CAUCKernel

|o*CAvgDiagKernelNormalizer

|o*CBitString

|o*CBrayCurtisDistance

|o*CCache< T >

|o*CCanberraMetric

|o*CCanberraWordDistance

|o*CChebyshewMetric

|o*CChi2Kernel

|o*CChiSquareDistance

|o*CClassifier

|o*CCombinedDotFeatures

|o*CCombinedFeatures

|o*CCombinedKernel

|o*CCommUlongStringKernel

|o*CCommWordStringKernel

|o*CConstKernel

|o*CCosineDistance

|o*CCplex

|o*CCPLEXSVM

|o*CCustomKernel

|o*CDiagKernel

|o*CDiceKernelNormalizer

|o*CDistance

|o*CDistanceKernel

|o*CDistanceMachine

|o*CDistribution

|o*CDotFeatures

|o*CDummyFeatures

|o*CDynamicArray< T >

|o*CDynInt< T, sz >

|o*CDynProg

|o*CEuclidianDistance

|o*CExplicitSpecFeatures

|o*CFeatures

|o*CFile

|o*CFirstElementKernelNormalizer

|o*CFixedDegreeStringKernel

|o*CFKFeatures

|o*CGaussianKernel

|o*CGaussianShiftKernel

|o*CGaussianShortRealKernel

|o*CGCArray< T >

|o*CGeodesicMetric

|o*CGHMM

|o*CGMNPLib

|o*CGMNPMKL

|o*CGMNPSVM

|o*CGNPPLib

|o*CGNPPSVM

|o*CGPBTSVM

|o*CHammingWordDistance

|o*CHierarchical

|o*CHistogram

|o*CHistogramWordStringKernel

|o*CHMM

|o*CIdentityKernelNormalizer

|o*CImplicitWeightedSpecFeatures

|o*CIndirectObject< T, P >

|o*CIO

|o*CJensenMetric

|o*CKernel

|o*CKernelMachine

|o*CKernelNormalizer

|o*CKernelPerceptron

|o*CKMeans

|o*CKNN

|o*CKRR

|o*CLabels

|o*CLDA

|o*CLibLinear

|o*CLibSVM

|o*CLibSVMMultiClass

|o*CLibSVMOneClass

|o*CLibSVR

|o*CLinearByteKernel

|o*CLinearClassifier

|o*CLinearHMM

|o*CLinearKernel

|o*CLinearStringKernel

|o*CLinearWordKernel

|o*CList< T >

|o*CListElement< T >

|o*CLocalAlignmentStringKernel

|o*CLocalityImprovedStringKernel

|o*CLogPlusOne

|o*CLPBoost

|o*CLPM

|o*CManhattanMetric

|o*CManhattanWordDistance

|o*CMatchWordStringKernel

|o*CMath

|o*CMemoryMappedFile< T >

|o*CMinkowskiMetric

|o*CModel

|o*CMPDSVM

|o*CMultiClassSVM

|o*CNormDerivativeLem3

|o*CNormOne

|o*COligoStringKernel

|o*CParallel

|o*CPCACut

|o*CPerceptron

|o*CPerformanceMeasures

|o*CPlif

|o*CPlifArray

|o*CPlifBase

|o*CPluginEstimate

|o*CPolyKernel

|o*CPolyMatchStringKernel

|o*CPolyMatchWordStringKernel

|o*CPreProc

|o*CPruneVarSubMean

|o*CPyramidChi2

|o*CQPBSVMLib

|o*CRealDistance

|o*CRealFileFeatures

|o*CSalzbergWordStringKernel

|o*CSGObject

|o*CSigmoidKernel

|o*CSignal

|o*CSimpleDistance< ST >

|o*CSimpleFeatures< ST >

|o*CSimpleFile< T >

|o*CSimpleKernel< ST >

|o*CSimpleLocalityImprovedStringKernel

|o*CSimplePreProc< ST >

|o*CSortUlongString

|o*CSortWordString

|o*CSparseDistance< ST >

|o*CSparseEuclidianDistance

|o*CSparseFeatures< ST >

|o*CSparseGaussianKernel

|o*CSparseKernel< ST >

|o*CSparseLinearKernel

|o*CSparsePolyKernel

|o*CSparsePreProc< ST >

|o*CSqrtDiagKernelNormalizer

|o*CStringDistance< ST >

|o*CStringFeatures< ST >

|o*CStringKernel< ST >

|o*CStringPreProc< ST >

|o*CSubGradientLPM

|o*CSubGradientSVM

|o*CSVM

|o*CSVMLin

|o*CSVMOcas

|o*CSVMSGD

|o*CTanimotoDistance

|o*CTanimotoKernelNormalizer

|o*CTensorProductPairKernel

|o*CTime

|o*CTOPFeatures

|o*CTrie< Trie >

|o*CTron

|o*CVersion

|o*CWDFeatures

|o*CWDSVMOcas

|o*CWeightedCommWordStringKernel

|o*CWeightedDegreePositionStringKernel

|o*CWeightedDegreeStringKernel

|o*glpkwrapper

|o*glpkwrapper4CGMNPMKL

|o*lpwrapper

|o*CDynProg::segment_loss_struct

|o*ShogunException

|o*CDynProg::svm_values_struct

|\*CSVM::TModel

o+Class Hierarchy

|o*CDynInt< T, sz >

|o*CIndirectObject< T, P >

|o*CIO

|o*CListElement< T >

|o*CModel

|o*CParallel

|o+CSGObject

||o*CAlphabet

||o+CArray< T >

||o*CBitString

||o*CCache< T >

||o*CCache< float64_t >

||o+CClassifier

||o*CCplex

||o+CDistance

||o+CDistribution

||o*CDynamicArray< T >

||o*CDynProg

||o+CFeatures

||o*CFile

||o*CGCArray< T >

||o*CGMNPLib

||o*CGNPPLib

||o+CKernel

||o+CKernelNormalizer

||o*CLabels

||o*CList< T >

||o*CMath

||o*CMemoryMappedFile< T >

||o*CPerformanceMeasures

||o+CPlifBase

||o+CPreProc

||o*CQPBSVMLib

||o*CSignal

||o*CSimpleFile< T >

||o*CTime

||o*CTrie< Trie >

||\*CTron

|o*CVersion

|o+lpwrapper

|o*CDynProg::segment_loss_struct

|o*ShogunException

|o*CDynProg::svm_values_struct

|\*CSVM::TModel

o*Class Members

o*Graphical Class Hierarchy

o+File List

|o*Alphabet.cpp

|o*Alphabet.h

|o*Array.h

|o*Array2.h

|o*Array3.h

|o*AttributeFeatures.cpp

|o*AttributeFeatures.h

|o*AUCKernel.cpp

|o*AUCKernel.h

|o*Authors.mainpage

|o*AvgDiagKernelNormalizer.h

|o*BitString.h

|o*BrayCurtisDistance.cpp

|o*BrayCurtisDistance.h

|o*Cache.h

|o*CanberraMetric.cpp

|o*CanberraMetric.h

|o*CanberraWordDistance.cpp

|o*CanberraWordDistance.h

|o*ChebyshewMetric.cpp

|o*ChebyshewMetric.h

|o*Chi2Kernel.cpp

|o*Chi2Kernel.h

|o*ChiSquareDistance.cpp

|o*ChiSquareDistance.h

|o*Classifier.cpp

|o*Classifier.h

|o*CombinedDotFeatures.cpp

|o*CombinedDotFeatures.h

|o*CombinedFeatures.cpp

|o*CombinedFeatures.h

|o*CombinedKernel.cpp

|o*CombinedKernel.h

|o*common.h

|o*CommUlongStringKernel.cpp

|o*CommUlongStringKernel.h

|o*CommWordStringKernel.cpp

|o*CommWordStringKernel.h

|o*config.h

|o*ConstKernel.cpp

|o*ConstKernel.h

|o*CosineDistance.cpp

|o*CosineDistance.h

|o*Cplex.cpp

|o*Cplex.h

|o*CPLEXSVM.cpp

|o*CPLEXSVM.h

|o*CustomKernel.cpp

|o*CustomKernel.h

|o*developerreadme.mainpage

|o*DeveloperTutorial.mainpage

|o*DiagKernel.cpp

|o*DiagKernel.h

|o*DiceKernelNormalizer.h

|o*Distance.cpp

|o*Distance.h

|o*DistanceKernel.cpp

|o*DistanceKernel.h

|o*DistanceMachine.cpp

|o*DistanceMachine.h

|o*Distribution.cpp

|o*Distribution.h

|o*Documentation.mainpage

|o*DotFeatures.cpp

|o*DotFeatures.h

|o*DummyFeatures.h

|o*DynamicArray.h

|o*DynInt.h

|o*DynProg.cpp

|o*DynProg.h

|o*EierlegendeWollmilchSauInterface.mainpage

|o*EuclidianDistance.cpp

|o*EuclidianDistance.h

|o*ExplicitSpecFeatures.cpp

|o*ExplicitSpecFeatures.h

|o*FAQ.mainpage

|o*Features.cpp

|o*Features.h

|o*File.cpp

|o*File.h

|o*FirstElementKernelNormalizer.h

|o*FixedDegreeStringKernel.cpp

|o*FixedDegreeStringKernel.h

|o*FKFeatures.cpp

|o*FKFeatures.h

|o*GaussianKernel.cpp

|o*GaussianKernel.h

|o*GaussianShiftKernel.cpp

|o*GaussianShiftKernel.h

|o*GaussianShortRealKernel.cpp

|o*GaussianShortRealKernel.h

|o*GCArray.h

|o*GeodesicMetric.cpp

|o*GeodesicMetric.h

|o*GHMM.cpp

|o*GHMM.h

|o*gmnplib.cpp

|o*gmnplib.h

|o*gmnpmkl.cpp

|o*gmnpmkl.h

|o*GMNPSVM.cpp

|o*GMNPSVM.h

|o*gnpplib.cpp

|o*gnpplib.h

|o*GNPPSVM.cpp

|o*GNPPSVM.h

|o*GPBTSVM.cpp

|o*GPBTSVM.h

|o*gpdt.cpp

|o*gpdt.h

|o*gpdtsolve.cpp

|o*gpdtsolve.h

|o*gpm.cpp

|o*gpm.h

|o*HammingWordDistance.cpp

|o*HammingWordDistance.h

|o*Hierarchical.cpp

|o*Hierarchical.h

|o*Histogram.cpp

|o*Histogram.h

|o*HistogramWordStringKernel.cpp

|o*HistogramWordStringKernel.h

|o*HMM.cpp

|o*HMM.h

|o*IdentityKernelNormalizer.h

|o*ImplicitWeightedSpecFeatures.cpp

|o*ImplicitWeightedSpecFeatures.h

|o*IndirectObject.h

|o*init.cpp

|o*init.h

|o*Installation.mainpage

|o*Interfaces.mainpage

|o*io.cpp

|o*io.h

|o*JensenMetric.cpp

|o*JensenMetric.h

|o*Kernel.cpp

|o*Kernel.h

|o*KernelMachine.cpp

|o*KernelMachine.h

|o*KernelNormalizer.h

|o*KernelPerceptron.cpp

|o*KernelPerceptron.h

|o*KMeans.cpp

|o*KMeans.h

|o*KNN.cpp

|o*KNN.h

|o*KRR.cpp

|o*KRR.h

|o*Labels.cpp

|o*Labels.h

|o*lapack.cpp

|o*lapack.h

|o*LDA.cpp

|o*LDA.h

|o*LibLinear.cpp

|o*LibLinear.h

|o*libocas.cpp

|o*libocas.h

|o*libocas_common.h

|o*LibSVM.cpp

|o*LibSVM.h

|o*LibSVMMultiClass.cpp

|o*LibSVMMultiClass.h

|o*LibSVMOneClass.cpp

|o*LibSVMOneClass.h

|o*LibSVR.cpp

|o*LibSVR.h

|o*License.mainpage

|o*LinearByteKernel.cpp

|o*LinearByteKernel.h

|o*LinearClassifier.cpp

|o*LinearClassifier.h

|o*LinearHMM.cpp

|o*LinearHMM.h

|o*LinearKernel.cpp

|o*LinearKernel.h

|o*LinearStringKernel.cpp

|o*LinearStringKernel.h

|o*LinearWordKernel.cpp

|o*LinearWordKernel.h

|o*List.h

|o*LocalAlignmentStringKernel.cpp

|o*LocalAlignmentStringKernel.h

|o*LocalityImprovedStringKernel.cpp

|o*LocalityImprovedStringKernel.h

|o*LogPlusOne.cpp

|o*LogPlusOne.h

|o*LPBoost.cpp

|o*LPBoost.h

|o*LPM.cpp

|o*LPM.h

|o*ManhattanMetric.cpp

|o*ManhattanMetric.h

|o*ManhattanWordDistance.cpp

|o*ManhattanWordDistance.h

|o*MatchWordStringKernel.cpp

|o*MatchWordStringKernel.h

|o*Mathematics.cpp

|o*Mathematics.h

|o*memory.cpp

|o*memory.h

|o*MemoryMappedFile.h

|o*Methods.mainpage

|o*MindyGramFeatures.cpp

|o*MindyGramFeatures.h

|o*MindyGramKernel.cpp

|o*MindyGramKernel.h

|o*MinkowskiMetric.cpp

|o*MinkowskiMetric.h

|o*ModularInterfaces.mainpage

|o*ModularTutorial.mainpage

|o*MPDSVM.cpp

|o*MPDSVM.h

|o*MultiClassSVM.cpp

|o*MultiClassSVM.h

|o*NormDerivativeLem3.cpp

|o*NormDerivativeLem3.h

|o*NormOne.cpp

|o*NormOne.h

|o*OligoStringKernel.cpp

|o*OligoStringKernel.h

|o*Parallel.cpp

|o*Parallel.h

|o*PCACut.cpp

|o*PCACut.h

|o*Perceptron.cpp

|o*Perceptron.h

|o*PerformanceMeasures.cpp

|o*PerformanceMeasures.h

|o*Plif.cpp

|o*Plif.h

|o*PlifArray.cpp

|o*PlifArray.h

|o*PlifBase.h

|o*PluginEstimate.cpp

|o*PluginEstimate.h

|o*PolyKernel.cpp

|o*PolyKernel.h

|o*PolyMatchStringKernel.cpp

|o*PolyMatchStringKernel.h

|o*PolyMatchWordStringKernel.cpp

|o*PolyMatchWordStringKernel.h

|o*pr_loqo.cpp

|o*pr_loqo.h

|o*PreProc.cpp

|o*PreProc.h

|o*PruneVarSubMean.cpp

|o*PruneVarSubMean.h

|o*PyramidChi2.cpp

|o*PyramidChi2.h

|o*qpbsvmlib.cpp

|o*qpbsvmlib.h

|o*qpssvmlib.cpp

|o*qpssvmlib.h

|o*RealDistance.h

|o*RealFileFeatures.cpp

|o*RealFileFeatures.h

|o*Regression.h

|o*SalzbergWordStringKernel.cpp

|o*SalzbergWordStringKernel.h

|o*Screenshots.mainpage

|o*SGObject.cpp

|o*SGObject.h

|o*ShogunException.cpp

|o*ShogunException.h

|o*SigmoidKernel.cpp

|o*SigmoidKernel.h

|o*Signal.cpp

|o*Signal.h

|o*SimpleDistance.h

|o*SimpleFeatures.h

|o*SimpleFile.h

|o*SimpleKernel.h

|o*SimpleLocalityImprovedStringKernel.cpp

|o*SimpleLocalityImprovedStringKernel.h

|o*SimplePreProc.h

|o*soname.mainpage

|o*SortUlongString.cpp

|o*SortUlongString.h

|o*SortWordString.cpp

|o*SortWordString.h

|o*SparseDistance.h

|o*SparseEuclidianDistance.cpp

|o*SparseEuclidianDistance.h

|o*SparseFeatures.h

|o*SparseGaussianKernel.cpp

|o*SparseGaussianKernel.h

|o*SparseKernel.h

|o*SparseLinearKernel.cpp

|o*SparseLinearKernel.h

|o*SparsePolyKernel.cpp

|o*SparsePolyKernel.h

|o*SparsePreProc.h

|o*SqrtDiagKernelNormalizer.h

|o*ssl.cpp

|o*ssl.h

|o*StaticCommandLineInterface.mainpage

|o*StaticInterfaces.mainpage

|o*StaticOctaveInterface.mainpage

|o*StaticPythonInterface.mainpage

|o*StaticRInterface.mainpage

|o*StaticTutorial.mainpage

|o*StringDistance.h

|o*StringFeatures.h

|o*StringKernel.h

|o*StringPreProc.h

|o*SubGradientLPM.cpp

|o*SubGradientLPM.h

|o*SubGradientSVM.cpp

|o*SubGradientSVM.h

|o*SVM.cpp

|o*SVM.h

|o*SVM_libsvm.cpp

|o*SVM_libsvm.h

|o*SVM_linear.cpp

|o*SVM_linear.h

|o*SVMLin.cpp

|o*SVMLin.h

|o*SVMOcas.cpp

|o*SVMOcas.h

|o*SVMSGD.cpp

|o*SVMSGD.h

|o*TanimotoDistance.cpp

|o*TanimotoDistance.h

|o*TanimotoKernelNormalizer.h

|o*TensorProductPairKernel.cpp

|o*TensorProductPairKernel.h

|o*Time.cpp

|o*Time.h

|o*TOPFeatures.cpp

|o*TOPFeatures.h

|o*Trie.cpp

|o*Trie.h

|o*Tron.cpp

|o*Tron.h

|o*Tutorial.mainpage

|o*Version.cpp

|o*Version.h

|o*versionstring.h

|o*WDFeatures.cpp

|o*WDFeatures.h

|o*WDSVMOcas.cpp

|o*WDSVMOcas.h

|o*WeightedCommWordStringKernel.cpp

|o*WeightedCommWordStringKernel.h

|o*WeightedDegreePositionStringKernel.cpp

|o*WeightedDegreePositionStringKernel.h

|o*WeightedDegreeStringKernel.cpp

|\*WeightedDegreeStringKernel.h

o+Directory Hierarchy

|o+pages

|\+src

| \+libshogun

|  o+base

|  o+classifier

|  o+clustering

|  o+distance

|  o+distributions

|  o+evaluation

|  o+features

|  o+kernel

|  |o*AUCKernel.cpp

|  |o*AUCKernel.h

|  |o*AvgDiagKernelNormalizer.h

|  |o*Chi2Kernel.cpp

|  |o*Chi2Kernel.h

|  |o*CombinedKernel.cpp

|  |o*CombinedKernel.h

|  |o*CommUlongStringKernel.cpp

|  |o*CommUlongStringKernel.h

|  |o*CommWordStringKernel.cpp

|  |o*CommWordStringKernel.h

|  |o*ConstKernel.cpp

|  |o*ConstKernel.h

|  |o*CustomKernel.cpp

|  |o*CustomKernel.h

|  |o*DiagKernel.cpp

|  |o*DiagKernel.h

|  |o*DiceKernelNormalizer.h

|  |o*DistanceKernel.cpp

|  |o*DistanceKernel.h

|  |o*FirstElementKernelNormalizer.h

|  |o*FixedDegreeStringKernel.cpp

|  |o*FixedDegreeStringKernel.h

|  |o*GaussianKernel.cpp

|  |o*GaussianKernel.h

|  |o*GaussianShiftKernel.cpp

|  |o*GaussianShiftKernel.h

|  |o*GaussianShortRealKernel.cpp

|  |o*GaussianShortRealKernel.h

|  |o*HistogramWordStringKernel.cpp

|  |o*HistogramWordStringKernel.h

|  |o*IdentityKernelNormalizer.h

|  |o*Kernel.cpp

|  |o*Kernel.h

|  |o*KernelMachine.cpp

|  |o*KernelMachine.h

|  |o*KernelNormalizer.h

|  |o*LinearByteKernel.cpp

|  |o*LinearByteKernel.h

|  |o*LinearKernel.cpp

|  |o*LinearKernel.h

|  |o*LinearStringKernel.cpp

|  |o*LinearStringKernel.h

|  |o*LinearWordKernel.cpp

|  |o*LinearWordKernel.h

|  |o*LocalAlignmentStringKernel.cpp

|  |o*LocalAlignmentStringKernel.h

|  |o*LocalityImprovedStringKernel.cpp

|  |o*LocalityImprovedStringKernel.h

|  |o*MatchWordStringKernel.cpp

|  |o*MatchWordStringKernel.h

|  |o*MindyGramKernel.cpp

|  |o*MindyGramKernel.h

|  |o*OligoStringKernel.cpp

|  |o*OligoStringKernel.h

|  |o*PolyKernel.cpp

|  |o*PolyKernel.h

|  |o*PolyMatchStringKernel.cpp

|  |o*PolyMatchStringKernel.h

|  |o*PolyMatchWordStringKernel.cpp

|  |o*PolyMatchWordStringKernel.h

|  |o*PyramidChi2.cpp

|  |o*PyramidChi2.h

|  |o*SalzbergWordStringKernel.cpp

|  |o*SalzbergWordStringKernel.h

|  |o*SigmoidKernel.cpp

|  |o*SigmoidKernel.h

|  |o*SimpleKernel.h

|  |o*SimpleLocalityImprovedStringKernel.cpp

|  |o*SimpleLocalityImprovedStringKernel.h

|  |o*SparseGaussianKernel.cpp

|  |o*SparseGaussianKernel.h

|  |o*SparseKernel.h

|  |o*SparseLinearKernel.cpp

|  |o*SparseLinearKernel.h

|  |o*SparsePolyKernel.cpp

|  |o*SparsePolyKernel.h

|  |o*SqrtDiagKernelNormalizer.h

|  |o*StringKernel.h

|  |o*TanimotoKernelNormalizer.h

|  |o*TensorProductPairKernel.cpp

|  |o*TensorProductPairKernel.h

|  |o*WeightedCommWordStringKernel.cpp

|  |o*WeightedCommWordStringKernel.h

|  |o*WeightedDegreePositionStringKernel.cpp

|  |o*WeightedDegreePositionStringKernel.h

|  |o*WeightedDegreeStringKernel.cpp

|  |\*WeightedDegreeStringKernel.h

|  o+lib

|  o+preproc

|  o+regression

|  \+structure

\*File Members