, including all inherited members.
add_to_normal(int32_t vector_idx, float64_t weight) | CKernel | [virtual] |
cache_size | CKernel | [protected] |
CKernel() | CKernel | |
CKernel(int32_t size) | CKernel | |
CKernel(CFeatures *l, CFeatures *r, int32_t size) | CKernel | |
cleanup() | COligoStringKernel | [virtual] |
clear_normal() | CKernel | [virtual] |
COligoStringKernel(int32_t cache_size, int32_t k, float64_t width) | COligoStringKernel | |
combined_kernel_weight | CKernel | [protected] |
compute(int32_t x, int32_t y) | COligoStringKernel | [virtual] |
compute_batch(int32_t num_vec, int32_t *vec_idx, float64_t *target, int32_t num_suppvec, int32_t *IDX, float64_t *alphas, float64_t factor=1.0) | CKernel | [virtual] |
compute_by_subkernel(int32_t vector_idx, float64_t *subkernel_contrib) | CKernel | [virtual] |
compute_optimized(int32_t vector_idx) | CKernel | [virtual] |
compute_row_start(int64_t offs, int32_t n, bool symmetric) | CKernel | [protected] |
CSGObject() | CSGObject | |
CSGObject(const CSGObject &orig) | CSGObject | |
CStringKernel(int32_t cachesize) | CStringKernel< char > | |
CStringKernel(CFeatures *l, CFeatures *r) | CStringKernel< char > | |
delete_optimization() | CKernel | [virtual] |
encodeOligo(const std::string &sequence, uint32_t k_mer_length, const std::string &allowed_characters, std::vector< std::pair< int32_t, float64_t > > &values) | COligoStringKernel | [protected, static] |
gauss_table | COligoStringKernel | [protected] |
get_cache_size() | CKernel | |
get_combined_kernel_weight() | CKernel | |
get_feature_class() | CStringKernel< char > | [virtual] |
get_feature_type() | CStringKernel< char > | [virtual] |
get_io() | CSGObject | |
get_is_initialized() | CKernel | |
get_kernel_matrix(float64_t **dst, int32_t *m, int32_t *n) | CKernel | |
get_kernel_matrix(int32_t &m, int32_t &n, T *target) | CKernel | |
get_kernel_matrix_helper(void *p) | CKernel | [protected, static] |
get_kernel_type() | COligoStringKernel | [virtual] |
get_lhs() | CKernel | |
get_name() const | COligoStringKernel | [virtual] |
get_normalizer() | CKernel | [virtual] |
get_num_subkernels() | CKernel | [virtual] |
get_num_vec_lhs() | CKernel | [virtual] |
get_num_vec_rhs() | CKernel | [virtual] |
get_optimization_type() | CKernel | |
get_parallel() | CSGObject | |
get_rhs() | CKernel | |
get_subkernel_weights(int32_t &num_weights) | CKernel | [virtual] |
get_version() | CSGObject | |
getSequences(const std::vector< std::string > &sequences, uint32_t k_mer_length, const std::string &allowed_characters, std::vector< std::vector< std::pair< int32_t, float64_t > > > &encoded_sequences) | COligoStringKernel | [protected, static] |
has_features() | CKernel | [virtual] |
has_property(EKernelProperty p) | CKernel | |
init(CFeatures *l, CFeatures *r) | COligoStringKernel | [virtual] |
init_normalizer() | CKernel | [virtual] |
init_optimization(int32_t count, int32_t *IDX, float64_t *weights) | CKernel | [virtual] |
init_optimization_svm(CSVM *svm) | CKernel | |
io | CSGObject | |
k | COligoStringKernel | [protected] |
kernel(int32_t idx_a, int32_t idx_b) | CKernel | |
kernel_matrix | CKernel | [protected] |
kernelOligoFast(const std::vector< std::pair< int32_t, float64_t > > &x, const std::vector< std::pair< int32_t, float64_t > > &y, int32_t max_distance=-1) | COligoStringKernel | [protected] |
lhs | CKernel | [protected] |
lhs_equals_rhs() | CKernel | |
list_kernel() | CKernel | |
load(CFile *loader) | CKernel | |
normalizer | CKernel | [protected] |
num_lhs | CKernel | [protected] |
num_rhs | CKernel | [protected] |
opt_type | CKernel | [protected] |
optimization_initialized | CKernel | [protected] |
parallel | CSGObject | |
properties | CKernel | [protected] |
remove_lhs() | CKernel | [virtual] |
remove_lhs_and_rhs() | CKernel | [virtual] |
remove_rhs() | CKernel | [virtual] |
rhs | CKernel | [protected] |
save(CFile *writer) | CKernel | |
set_cache_size(int32_t size) | CKernel | |
set_combined_kernel_weight(float64_t nw) | CKernel | |
set_io(CIO *io) | CSGObject | |
set_is_initialized(bool p_init) | CKernel | [protected] |
set_normalizer(CKernelNormalizer *normalizer) | CKernel | [virtual] |
set_optimization_type(EOptimizationType t) | CKernel | [virtual] |
set_parallel(CParallel *parallel) | CSGObject | |
set_property(EKernelProperty p) | CKernel | [protected] |
set_subkernel_weights(float64_t *weights, int32_t num_weights) | CKernel | [virtual] |
set_version(CVersion *version) | CSGObject | |
unset_property(EKernelProperty p) | CKernel | [protected] |
version | CSGObject | |
width | COligoStringKernel | [protected] |
~CKernel() | CKernel | [virtual] |
~COligoStringKernel() | COligoStringKernel | [virtual] |
~CSGObject() | CSGObject | [virtual] |