Modifier and Type | Constant Field | Value |
---|---|---|
private static final byte |
ADP_TYPE |
47 |
private static final byte |
ALT_ID |
15 |
private static final byte |
ANISO_B11 |
35 |
private static final byte |
ANISO_B12 |
38 |
private static final byte |
ANISO_B13 |
39 |
private static final byte |
ANISO_B22 |
36 |
private static final byte |
ANISO_B23 |
40 |
private static final byte |
ANISO_B33 |
37 |
private static final byte |
ANISO_BETA_11 |
41 |
private static final byte |
ANISO_BETA_12 |
44 |
private static final byte |
ANISO_BETA_13 |
45 |
private static final byte |
ANISO_BETA_22 |
42 |
private static final byte |
ANISO_BETA_23 |
46 |
private static final byte |
ANISO_BETA_33 |
43 |
private static final byte |
ANISO_LABEL |
20 |
private static final byte |
ANISO_MMCIF_ID |
21 |
private static final byte |
ANISO_MMCIF_U11 |
28 |
private static final byte |
ANISO_MMCIF_U12 |
31 |
private static final byte |
ANISO_MMCIF_U13 |
32 |
private static final byte |
ANISO_MMCIF_U22 |
29 |
private static final byte |
ANISO_MMCIF_U23 |
33 |
private static final byte |
ANISO_MMCIF_U33 |
30 |
private static final byte |
ANISO_U11 |
22 |
private static final byte |
ANISO_U12 |
25 |
private static final byte |
ANISO_U13 |
26 |
private static final byte |
ANISO_U22 |
23 |
private static final byte |
ANISO_U23 |
27 |
private static final byte |
ANISO_U33 |
24 |
private static final byte |
ASYM_ID |
59 |
private static final byte |
ATOM_ID |
70 |
private static final byte |
ATOM_TYPE_OXIDATION_NUMBER |
1 |
private static final byte |
ATOM_TYPE_SYMBOL |
0 |
private static final byte |
AUTH_ASYM_ID |
12 |
private static final byte |
AUTH_ATOM |
2 |
private static final byte |
AUTH_SEQ_ID |
13 |
private static final byte |
B_ISO |
10 |
private static final byte |
CARTN_X |
6 |
private static final byte |
CARTN_Y |
7 |
private static final byte |
CARTN_Z |
8 |
private static final byte |
CC_ATOM_CHARGE |
51 |
private static final byte |
CC_ATOM_ID |
49 |
private static final byte |
CC_ATOM_SYM |
50 |
private static final byte |
CC_ATOM_X |
52 |
private static final byte |
CC_ATOM_X_IDEAL |
55 |
private static final byte |
CC_ATOM_Y |
53 |
private static final byte |
CC_ATOM_Y_IDEAL |
56 |
private static final byte |
CC_ATOM_Z |
54 |
private static final byte |
CC_ATOM_Z_IDEAL |
57 |
private static final byte |
CC_COMP_ID |
48 |
private static final byte |
CCDC_GEOM_BOND_TYPE |
3 |
private static final byte |
CITATION_TITLE |
0 |
private static final byte |
COMP_ID |
11 |
private static final byte |
DISORDER_ASSEMBLY |
58 |
private static final byte |
DISORDER_GROUP |
19 |
private static final byte |
DUMMY_ATOM |
18 |
protected static final java.lang.String |
FAMILY_ATOM |
"_atom_site" |
private static final java.lang.String |
FAMILY_SGOP |
"_space_group_symop" |
private static final byte |
FRACT_X |
3 |
private static final byte |
FRACT_Y |
4 |
private static final byte |
FRACT_Z |
5 |
private static final byte |
GEOM_BOND_ATOM_SITE_LABEL_1 |
0 |
private static final byte |
GEOM_BOND_ATOM_SITE_LABEL_2 |
1 |
private static final byte |
GEOM_BOND_DISTANCE |
2 |
private static final byte |
GROUP_PDB |
16 |
private static final byte |
INS_CODE |
14 |
private static final byte |
LABEL |
1 |
private static final byte |
MODEL_NO |
17 |
private static final byte |
MOMENT_LABEL |
63 |
private static final byte |
MOMENT_PRELIM_X |
64 |
private static final byte |
MOMENT_PRELIM_Y |
65 |
private static final byte |
MOMENT_PRELIM_Z |
66 |
private static final byte |
MOMENT_X |
67 |
private static final byte |
MOMENT_Y |
68 |
private static final byte |
MOMENT_Z |
69 |
protected static final byte |
NONE |
-1 |
private static final byte |
OCCUPANCY |
9 |
private static final byte |
SEQ_ID |
71 |
private static final byte |
SITE_MULT |
61 |
private static final byte |
SUBSYS_ID |
60 |
private static final byte |
SYM_EQ_XYZ |
4 |
private static final byte |
SYM_MAGN_CENTERING |
9 |
private static final byte |
SYM_MAGN_REV |
7 |
private static final byte |
SYM_MAGN_REV_PRELIM |
6 |
private static final byte |
SYM_MAGN_SSG_ALG |
3 |
private static final byte |
SYM_MAGN_SSG_CENT_XYZ |
11 |
private static final byte |
SYM_MAGN_SSG_CENTERING |
10 |
private static final byte |
SYM_MAGN_SSG_REV |
8 |
private static final byte |
SYM_MAGN_XYZ |
1 |
private static final byte |
SYM_SSG_ALG |
2 |
private static final byte |
SYM_SSG_EQ_XYZ |
5 |
private static final byte |
SYM_XYZ |
0 |
private static final byte |
THERMAL_TYPE |
62 |
private static final java.lang.String |
titleRecords |
"__citation_title__publ_section_title__active_magnetic_irreps_details__" |
private static final byte |
TYPE_SYMBOL |
0 |
private static final byte |
U_ISO_OR_EQUIV |
34 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
ARRAY16 |
220 |
private static final int |
ARRAY32 |
221 |
private static final int |
BIN16 |
197 |
private static final int |
BIN32 |
198 |
private static final int |
BIN8 |
196 |
private static final int |
DEFINITE_xE0 |
192 |
private static final int |
EXT16 |
200 |
private static final int |
EXT32 |
201 |
private static final int |
EXT8 |
199 |
private static final int |
FALSE |
194 |
private static final int |
FIXEXT1 |
212 |
private static final int |
FIXEXT16 |
216 |
private static final int |
FIXEXT2 |
213 |
private static final int |
FIXEXT4 |
214 |
private static final int |
FIXEXT8 |
215 |
private static final int |
FIXMAP_xF0 |
128 |
private static final int |
FIXSTR_xE0 |
160 |
private static final int |
FLOAT32 |
202 |
private static final int |
FLOAT64 |
203 |
private static final int |
INT16 |
209 |
private static final int |
INT32 |
210 |
private static final int |
INT64 |
211 |
private static final int |
INT8 |
208 |
private static final int |
MAP16 |
222 |
private static final int |
MAP32 |
223 |
private static final int |
NEGATIVEFIXINT_xE0 |
224 |
private static final int |
NIL |
192 |
private static final int |
POSITIVEFIXINT_x80 |
128 |
private static final int |
STR16 |
218 |
private static final int |
STR32 |
219 |
private static final int |
STR8 |
217 |
private static final int |
TRUE |
195 |
private static final int |
UINT16 |
205 |
private static final int |
UINT32 |
206 |
private static final int |
UINT64 |
207 |
private static final int |
UINT8 |
204 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final byte |
ASSEM_ID |
0 |
private static final byte |
ASSEM_LIST |
2 |
private static final byte |
ASSEM_OPERS |
1 |
private static final byte |
BEG_ASYM_ID |
1 |
private static final byte |
BEG_INS_CODE |
3 |
private static final byte |
BEG_SEQ_ID |
2 |
private static final byte |
CHEM_COMP_BOND_AROMATIC_FLAG |
4 |
private static final byte |
CHEM_COMP_BOND_ATOM_ID_1 |
1 |
private static final byte |
CHEM_COMP_BOND_ATOM_ID_2 |
2 |
private static final byte |
CHEM_COMP_BOND_ID |
0 |
private static final byte |
CHEM_COMP_BOND_VALUE_ORDER |
3 |
private static final byte |
CHEM_COMP_ID |
0 |
private static final byte |
CHEM_COMP_NAME |
1 |
private static final byte |
CONF_TYPE_ID |
0 |
private static final byte |
END_ASYM_ID |
4 |
private static final byte |
END_INS_CODE |
6 |
private static final byte |
END_SEQ_ID |
5 |
private static final java.lang.String |
FAMILY_ASSEM_CAT |
"_pdbx_struct_assembly_gen." |
private static final java.lang.String |
FAMILY_CHEMCOMP_CAT |
"_chem_comp." |
private static final java.lang.String |
FAMILY_COMPBOND |
"_chem_comp_bond" |
private static final java.lang.String |
FAMILY_COMPBOND_CAT |
"_chem_comp_bond." |
private static final java.lang.String |
FAMILY_NCS |
"_struct_ncs_oper" |
private static final java.lang.String |
FAMILY_NCS_CAT |
"_struct_ncs_oper." |
private static final java.lang.String |
FAMILY_OPER |
"_pdbx_struct_oper_list" |
private static final java.lang.String |
FAMILY_OPER_CAT |
"_pdbx_struct_oper_list." |
private static final java.lang.String |
FAMILY_SEQUENCEDIF_CAT |
"_struct_ref_seq_dif." |
private static final java.lang.String |
FAMILY_SHEET |
"_struct_sheet_range" |
private static final java.lang.String |
FAMILY_SHEET_CAT |
"_struct_sheet_range." |
private static final java.lang.String |
FAMILY_STRUCSITE |
"_struct_site_gen" |
private static final java.lang.String |
FAMILY_STRUCSITE_CAT |
"_struct_site_gen." |
private static final java.lang.String |
FAMILY_STRUCTCONF |
"_struct_conf" |
private static final java.lang.String |
FAMILY_STRUCTCONF_CAT |
"_struct_conf." |
private static final java.lang.String |
FAMILY_STRUCTCONN |
"_struct_conn" |
private static final java.lang.String |
FAMILY_STRUCTCONN_CAT |
"_struct_conn." |
private static final byte |
HELIX_CLASS |
9 |
private static final byte |
OPER_ID |
12 |
private static final byte |
OPER_XYZ |
13 |
private static final byte |
SERIAL_NO |
8 |
private static final byte |
SHEET_ID |
0 |
private static final byte |
SITE_ASYM_ID |
2 |
private static final byte |
SITE_COMP_ID |
1 |
private static final byte |
SITE_ID |
0 |
private static final byte |
SITE_INS_CODE |
4 |
private static final byte |
SITE_SEQ_ID |
3 |
private static final byte |
STRAND_ID |
7 |
private static final byte |
STRUCT_CONN_ALT1 |
4 |
private static final byte |
STRUCT_CONN_ALT2 |
10 |
private static final byte |
STRUCT_CONN_ASYM1 |
0 |
private static final byte |
STRUCT_CONN_ASYM2 |
6 |
private static final byte |
STRUCT_CONN_ATOM1 |
3 |
private static final byte |
STRUCT_CONN_ATOM2 |
9 |
private static final byte |
STRUCT_CONN_COMP1 |
2 |
private static final byte |
STRUCT_CONN_COMP2 |
8 |
private static final byte |
STRUCT_CONN_ORDER |
13 |
private static final byte |
STRUCT_CONN_SEQ1 |
1 |
private static final byte |
STRUCT_CONN_SEQ2 |
7 |
private static final byte |
STRUCT_CONN_SYMM1 |
5 |
private static final byte |
STRUCT_CONN_SYMM2 |
11 |
private static final byte |
STRUCT_CONN_TYPE |
12 |
private static final byte |
STRUCT_ID |
7 |
private static final byte |
STRUCT_REF_G1 |
1 |
private static final byte |
STRUCT_REF_G3 |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
DEPR_FD_COS |
72 |
private static final int |
DEPR_FD_SIN |
73 |
private static final int |
DEPR_FO_COS |
74 |
private static final int |
DEPR_FO_SIN |
75 |
private static final int |
DEPR_FU_COS |
76 |
private static final int |
DEPR_FU_SIN |
77 |
private static final int |
DISP_SAW_AX |
19 |
private static final int |
DISP_SAW_AY |
20 |
private static final int |
DISP_SAW_AZ |
21 |
private static final int |
DISP_SAW_C |
22 |
private static final int |
DISP_SAW_W |
23 |
private static final int |
DISP_SPEC_LABEL |
18 |
private static final int |
FD_ID |
40 |
private static final int |
FDP_ID |
43 |
private static final int |
FO_ID |
41 |
private static final int |
FOP_ID |
44 |
private static final int |
FU_ID |
42 |
private static final int |
FUP_ID |
45 |
private static final int |
FWV_DISP_AXIS |
12 |
private static final int |
FWV_DISP_COS |
14 |
private static final int |
FWV_DISP_LABEL |
11 |
private static final int |
FWV_DISP_MODULUS |
16 |
private static final int |
FWV_DISP_PHASE |
17 |
private static final int |
FWV_DISP_SEQ_ID |
13 |
private static final int |
FWV_DISP_SIN |
15 |
private static final int |
FWV_ID |
0 |
private static final int |
FWV_OCC_COS |
26 |
private static final int |
FWV_OCC_LABEL |
24 |
private static final int |
FWV_OCC_MODULUS |
28 |
private static final int |
FWV_OCC_PHASE |
29 |
private static final int |
FWV_OCC_SEQ_ID |
25 |
private static final int |
FWV_OCC_SIN |
27 |
private static final int |
FWV_SPIN_AXIS |
49 |
private static final int |
FWV_SPIN_COS |
51 |
private static final int |
FWV_SPIN_LABEL |
48 |
private static final int |
FWV_SPIN_MODULUS |
53 |
private static final int |
FWV_SPIN_PHASE |
54 |
private static final int |
FWV_SPIN_SEQ_ID |
50 |
private static final int |
FWV_SPIN_SIN |
52 |
private static final int |
FWV_U_COS |
36 |
private static final int |
FWV_U_LABEL |
33 |
private static final int |
FWV_U_MODULUS |
38 |
private static final int |
FWV_U_PHASE |
39 |
private static final int |
FWV_U_SEQ_ID |
35 |
private static final int |
FWV_U_SIN |
37 |
private static final int |
FWV_U_TENS |
34 |
private static final int |
FWV_X |
5 |
private static final int |
FWV_Y |
6 |
private static final int |
FWV_Z |
7 |
private static final int |
JANA_FWV_Q1_COEF |
8 |
private static final int |
JANA_FWV_Q2_COEF |
9 |
private static final int |
JANA_FWV_Q3_COEF |
10 |
private static final int |
JANA_OCC_ABS_LABEL |
46 |
private static final int |
JANA_OCC_ABS_O_0 |
47 |
private static final int |
LEG_DISP_AXIS |
62 |
private static final int |
LEG_DISP_COEF |
64 |
private static final int |
LEG_DISP_LABEL |
61 |
private static final int |
LEG_DISP_ORDER |
63 |
private static final int |
LEG_OCC_COEF |
71 |
private static final int |
LEG_OCC_LABEL |
69 |
private static final int |
LEG_OCC_ORDER |
70 |
private static final int |
LEG_U_COEF |
68 |
private static final int |
LEG_U_LABEL |
65 |
private static final int |
LEG_U_ORDER |
67 |
private static final int |
LEG_U_TENS |
66 |
private static final int |
NONE |
-1 |
private static final int |
OCC_CRENEL_C |
31 |
private static final int |
OCC_CRENEL_W |
32 |
private static final int |
OCC_SPECIAL_LABEL |
30 |
private static final int |
SPIN_SAW_AX |
56 |
private static final int |
SPIN_SAW_AY |
57 |
private static final int |
SPIN_SAW_AZ |
58 |
private static final int |
SPIN_SAW_C |
59 |
private static final int |
SPIN_SAW_W |
60 |
private static final int |
SPIN_SPEC_LABEL |
55 |
private static final int |
WV_ID |
1 |
private static final int |
WV_X |
2 |
private static final int |
WV_Y |
3 |
private static final int |
WV_Z |
4 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
U_LIST |
"U11U22U33U12U13U23UISO" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
ffTypes |
" CA CB CC CD CE CF CG CH CI CJ CK CM CN CP CQ CR CT CV CW HA HP HC HO HS HW LP NA NB NC NT OH OS OW SH AH BH HT HY AC BC CS OA OB OE OT dw hc hi hn ho hp hs hw hscp htip ca cg ci cn co coh cp cr cs ct c3h c3m c4h c4m na nb nh nho nh+ ni nn np npc nr nt nz oc oe oh op oscp otip sc sh sp br cl ca+ ar si lp nu sz oz az pz ga ge tioc titd li+ na+ rb+ cs+ mg2+ ca2+ ba2+ cu2+ cl- br- so4 sy oy ay ayt nac+ mg2c fe2c mn4c mn3c co2c ni2c lic+ pd2+ ti4c sr2c ca2c cly- hocl py vy nh4+ so4y lioh naoh koh foh cloh beoh al CE1 CF1 CF2 CF3 CG CD2 CH1E CH2E CH3E CM CP3 CPH1 CPH2 CQ66 CR55 CR56 CR66 CS66 CT CT3 CT4 CUA1 CUA2 CUA3 CUY1 CUY2 HA HC HMU HO HT LP NC NC2 NO2 NP NR1 NR2 NR3 NR55 NR56 NR66 NT NX OA OAC OC OE OH2 OK OM OS OSH OSI OT OW PO3 PO4 PT PUA1 PUY1 SE SH1E SK SO1 SO2 SO3 SO4 ST ST2 ST2 br br- br1 cl cl- cl1 cl12 cl13 cl14 cl1p ca+ cu+2 fe+2 mg+2 zn+2 cs+ li+ na+ rb+ al4z si si4 si4c si4z ar he kr ne xe dw hi hw ca cg ci co coh cp cr cs ct ct3 na nb nh nho ni no np nt nt2 nz oa oc oh op os ot sp bt cl\' si4l si5l si5t si6 si6o si\' br ca cc cd ce cf cl cp cq cu cv cx cy ha hc hn ho hp hs na nb nc nd nh oh os pb pc pd pe pf px py sh ss sx sy hn2 ho2 cz oo oz si sio hsi osi " |
private static final java.lang.String |
secondCharOnly |
" AH BH AC BC " |
private static final java.lang.String |
specialTypes |
" IM IP sz az sy ay ayt " |
private static final java.lang.String |
twoChar |
" al al4z ar ba2+ beoh br br- br1 ca+ ca2+ ca2c cl cl\' cl- cl1 cl12 cl13 cl14 cl1p cloh cly- co2c cs+ cu+2 cu2+ fe+2 fe2c ga ge he kr li+ lic+ lioh lp LP mg+2 mg2+ mg2c mn3c mn4c na+ nac+ naoh ne ni2c nu pd2+ rb+ si si\' si4 si4c si4l si4z si5l si5t si6 si6o sio sr2c ti4c tioc titd xe zn+2 " |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final float |
_8PI2_ |
78.95683288574219f |
private static final java.lang.String |
lineOptions |
"ATOM HETATM MODEL CONECT HELIX SHEET TURN HET HETNAM ANISOU SITE CRYST1 SCALE1 SCALE2 SCALE3 EXPDTA FORMUL REMARK HEADER COMPND SOURCE TITLE SEQADV " |
private static final int |
MODE_HEX |
1 |
private static final int |
MODE_HYBRID36 |
2 |
private static final int |
MODE_PDB |
0 |
private static final float |
RAD_PER_DEG |
0.01745329238474369f |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final byte |
APPEND |
97 |
private static final byte |
APPENDS |
101 |
private static final byte |
BINFLOAT |
71 |
private static final byte |
BINGET |
104 |
private static final byte |
BININT |
74 |
private static final byte |
BININT1 |
75 |
private static final byte |
BININT2 |
77 |
private static final byte |
BINPUT |
113 |
private static final byte |
BINSTRING |
84 |
private static final byte |
BINUNICODE |
87 |
private static final byte |
BUILD |
98 |
private static final byte |
EMPTY_DICT |
125 |
private static final byte |
EMPTY_LIST |
93 |
private static final byte |
GLOBAL |
99 |
private static final byte |
INT |
73 |
private static final byte |
LONG_BINGET |
106 |
private static final byte |
LONG_BINPUT |
114 |
private static final byte |
MARK |
40 |
private static final byte |
NONE |
78 |
private static final byte |
OBJ |
111 |
private static final byte |
SETITEM |
115 |
private static final byte |
SETITEMS |
117 |
private static final byte |
SHORT_BINSTRING |
85 |
private static final byte |
STOP |
46 |
private static final byte |
TUPLE |
116 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final int |
active_selections |
351 |
static final int |
alignment_as_cylinders |
692 |
static final int |
all_states |
49 |
static final int |
ALTLOC |
40 |
static final int |
ambient |
7 |
static final int |
ambient_occlusion_mode |
702 |
static final int |
ambient_occlusion_scale |
703 |
static final int |
ambient_occlusion_smooth |
704 |
static final int |
anaglyph_mode |
706 |
static final int |
angle_color |
575 |
static final int |
angle_label_position |
406 |
static final int |
angle_size |
405 |
static final int |
animation |
388 |
static final int |
animation_duration |
389 |
static final int |
ANISOU |
45 |
static final int |
antialias |
12 |
static final int |
async_builds |
506 |
static final int |
ati_bugs |
585 |
static final int |
atom_name_wildcard |
413 |
static final int |
atom_type_format |
660 |
static final int |
auto_classify_atoms |
360 |
static final int |
auto_color |
238 |
static final int |
auto_color_next |
239 |
static final int |
auto_copy_images |
557 |
static final int |
auto_defer_atom_count |
653 |
static final int |
auto_defer_builds |
567 |
static final int |
auto_dss |
323 |
static final int |
auto_hide_selections |
79 |
static final int |
auto_indicate_flags |
147 |
static final int |
auto_number_selections |
443 |
static final int |
auto_overlay |
603 |
static final int |
auto_remove_hydrogens |
158 |
static final int |
auto_rename_duplicate_objects |
561 |
static final int |
auto_sculpt |
162 |
static final int |
auto_show_lines |
51 |
static final int |
auto_show_nonbonded |
72 |
static final int |
auto_show_selections |
78 |
static final int |
auto_show_spheres |
420 |
static final int |
auto_zoom |
60 |
static final int |
autoclose_dialogs |
661 |
static final int |
backface_cull |
75 |
static final int |
batch_prefix |
187 |
static final int |
BATOM1 |
1 |
static final int |
BATOM2 |
2 |
static final int |
BFACTOR |
4 |
static final int |
bg_gradient |
662 |
static final int |
bg_image_filename |
712 |
static final int |
bg_image_linear |
715 |
static final int |
bg_image_mode |
713 |
static final int |
bg_image_tilesize |
714 |
static final int |
bg_rgb |
6 |
static final int |
bg_rgb_bottom |
664 |
static final int |
bg_rgb_top |
663 |
static final int |
BHASSETTING |
6 |
static final int |
BID |
4 |
static final int |
BONDED |
22 |
static final int |
bonding_vdw_cutoff |
0 |
static final int |
BONMASK |
47 |
static final int |
BORDER |
3 |
static final int |
BUNIQUEID |
5 |
static final int |
button_mode |
63 |
static final int |
button_mode_name |
330 |
static final int |
cache_display |
73 |
static final int |
cache_frames |
31 |
static final int |
cache_max |
578 |
static final int |
cache_memory |
264 |
static final int |
cache_mode |
573 |
static final int |
CARTOON |
30 |
static final int |
cartoon_color |
236 |
static final int |
cartoon_cylindrical_helices |
180 |
static final int |
cartoon_debug |
105 |
static final int |
cartoon_discrete_colors |
125 |
static final int |
cartoon_dumbbell_length |
115 |
static final int |
cartoon_dumbbell_radius |
117 |
static final int |
cartoon_dumbbell_width |
116 |
static final int |
cartoon_fancy_helices |
118 |
static final int |
cartoon_fancy_sheets |
119 |
static final int |
cartoon_flat_cycles |
260 |
static final int |
cartoon_flat_sheets |
113 |
static final int |
cartoon_helix_radius |
181 |
static final int |
cartoon_highlight_color |
241 |
static final int |
cartoon_ladder_color |
450 |
static final int |
cartoon_ladder_mode |
448 |
static final int |
cartoon_ladder_radius |
449 |
static final int |
cartoon_loop_cap |
432 |
static final int |
cartoon_loop_quality |
93 |
static final int |
cartoon_loop_radius |
92 |
static final int |
cartoon_nucleic_acid_as_cylinders |
693 |
static final int |
cartoon_nucleic_acid_color |
451 |
static final int |
cartoon_nucleic_acid_mode |
361 |
static final int |
cartoon_oval_length |
100 |
static final int |
cartoon_oval_quality |
102 |
static final int |
cartoon_oval_width |
101 |
static final int |
cartoon_power |
94 |
static final int |
cartoon_power_b |
95 |
static final int |
cartoon_putty_quality |
378 |
static final int |
cartoon_putty_radius |
377 |
static final int |
cartoon_putty_range |
382 |
static final int |
cartoon_putty_scale_max |
380 |
static final int |
cartoon_putty_scale_min |
379 |
static final int |
cartoon_putty_scale_power |
381 |
static final int |
cartoon_putty_transform |
581 |
static final int |
cartoon_rect_length |
96 |
static final int |
cartoon_rect_width |
97 |
static final int |
cartoon_refine |
123 |
static final int |
cartoon_refine_normals |
112 |
static final int |
cartoon_refine_tips |
124 |
static final int |
cartoon_ring_color |
429 |
static final int |
cartoon_ring_finder |
430 |
static final int |
cartoon_ring_mode |
427 |
static final int |
cartoon_ring_radius |
508 |
static final int |
cartoon_ring_transparency |
452 |
static final int |
cartoon_ring_width |
428 |
static final int |
cartoon_round_helices |
111 |
static final int |
cartoon_sampling |
91 |
static final int |
cartoon_side_chain_helper |
383 |
static final int |
cartoon_smooth_cycles |
259 |
static final int |
cartoon_smooth_first |
257 |
static final int |
cartoon_smooth_last |
258 |
static final int |
cartoon_smooth_loops |
114 |
static final int |
cartoon_throw |
122 |
static final int |
cartoon_trace_atoms |
269 |
static final int |
cartoon_transparency |
279 |
static final int |
cartoon_tube_cap |
431 |
static final int |
cartoon_tube_quality |
104 |
static final int |
cartoon_tube_radius |
103 |
static final int |
cartoon_use_shader |
643 |
static final int |
cavity_cull |
13 |
static final int |
cgo_debug |
674 |
static final int |
cgo_dot_radius |
303 |
static final int |
cgo_dot_width |
302 |
static final int |
cgo_ellipsoid_quality |
564 |
static final int |
cgo_lighting |
671 |
static final int |
cgo_line_radius |
130 |
static final int |
cgo_line_width |
129 |
static final int |
cgo_ray_width_scale |
109 |
static final int |
cgo_shader_ub_color |
669 |
static final int |
cgo_shader_ub_flags |
694 |
static final int |
cgo_shader_ub_normal |
670 |
static final int |
cgo_sphere_quality |
189 |
static final int |
cgo_transparency |
441 |
static final int |
cgo_use_shader |
668 |
static final int |
CHAIN |
34 |
static final int |
CHEMFLAG |
43 |
static final int |
clamp_colors |
214 |
static final int |
clean_electro_mode |
615 |
static final int |
COLOR |
9 |
static final int |
COLOR_BACK |
-7 |
static final int |
COLOR_BLACK |
1 |
static final int |
COLOR_FRONT |
-6 |
static final int |
cone_quality |
583 |
static final int |
connect_bonded |
487 |
static final int |
connect_cutoff |
182 |
static final int |
connect_mode |
179 |
static final int |
coulomb_cutoff |
367 |
static final int |
coulomb_dielectric |
243 |
static final int |
coulomb_units_factor |
242 |
static final int |
cull_spheres |
33 |
static final int |
CUSTOM |
18 |
static final int |
CUSTOMTYPE |
2 |
static final int |
cylinder_shader_ff_workaround |
697 |
static final int |
cylinders_shader_filter_faces |
687 |
static final int |
dash_as_cylinders |
684 |
static final int |
dash_color |
574 |
static final int |
dash_gap |
59 |
static final int |
dash_length |
58 |
static final int |
dash_radius |
108 |
static final int |
dash_round_ends |
280 |
static final int |
dash_use_shader |
683 |
static final int |
dash_width |
107 |
static final int |
debug_pick |
209 |
static final int |
default_2fofc_map_rep |
659 |
static final int |
default_buster_names |
657 |
static final int |
default_fofc_map_rep |
658 |
static final int |
default_phenix_names |
655 |
static final int |
default_phenix_no_fill_names |
656 |
static final int |
default_refmac_names |
654 |
static final int |
defer_builds_mode |
409 |
static final int |
defer_updates |
304 |
static final int |
depth_cue |
84 |
static final int |
dihedral_color |
576 |
static final int |
dihedral_label_position |
408 |
static final int |
dihedral_size |
407 |
static final int |
direct |
8 |
static final int |
DISCRETESTATE |
14 |
static final int |
dist_counter |
57 |
static final int |
distance_exclusion |
460 |
static final int |
dot_as_spheres |
701 |
static final int |
dot_color |
210 |
static final int |
dot_density |
2 |
static final int |
dot_hydrogens |
28 |
static final int |
dot_lighting |
336 |
static final int |
dot_mode |
3 |
static final int |
dot_normals |
332 |
static final int |
dot_radius |
29 |
static final int |
dot_solvent |
206 |
static final int |
dot_use_shader |
700 |
static final int |
dot_width |
77 |
static final int |
draw_frames |
436 |
static final int |
draw_mode |
614 |
static final int |
dump_binary |
749 |
static final int |
dynamic_measures |
637 |
static final int |
dynamic_width |
610 |
static final int |
dynamic_width_factor |
611 |
static final int |
dynamic_width_max |
613 |
static final int |
dynamic_width_min |
612 |
static final int |
edit_light |
707 |
static final int |
editor_auto_dihedral |
416 |
static final int |
editor_auto_origin |
439 |
static final int |
editor_bond_cycle_mode |
633 |
static final int |
editor_label_fragments |
321 |
static final int |
ELECRADIUS |
15 |
static final int |
ELEM |
37 |
static final int |
ellipsoid_color |
570 |
static final int |
ellipsoid_probability |
568 |
static final int |
ellipsoid_quality |
563 |
static final int |
ellipsoid_scale |
569 |
static final int |
ellipsoid_transparency |
571 |
static final int |
excl_display_lists_shaders |
682 |
static final int |
fast_idle |
54 |
static final int |
fetch_host |
636 |
static final int |
fetch_path |
507 |
static final int |
field_of_view |
152 |
static final int |
fit_iterations |
185 |
static final int |
fit_kabsch |
608 |
static final int |
fit_tolerance |
186 |
static final int |
FLAGS |
11 |
static final int |
float_labels |
232 |
static final int |
fog |
88 |
static final int |
fog_start |
192 |
static final int |
FORMALCHARGE |
28 |
static final int |
frame |
194 |
static final int |
full_screen |
142 |
static final int |
gamma |
76 |
static final int |
gaussian_b_adjust |
255 |
static final int |
gaussian_b_floor |
272 |
static final int |
gaussian_resolution |
271 |
static final int |
GEOM |
31 |
static final int |
geometry_export_mode |
586 |
static final int |
gl_ambient |
14 |
static final int |
gradient_max_length |
539 |
static final int |
gradient_min_length |
540 |
static final int |
gradient_min_slope |
541 |
static final int |
gradient_normal_min_dot |
542 |
static final int |
gradient_spacing |
544 |
static final int |
gradient_step_size |
543 |
static final int |
gradient_symmetry |
545 |
static final int |
grid_max |
580 |
static final int |
grid_mode |
577 |
static final int |
grid_slot |
579 |
static final int |
group_arrow_prefix |
547 |
static final int |
group_auto_mode |
537 |
static final int |
group_full_member_names |
538 |
static final int |
h_bond_cone |
286 |
static final int |
h_bond_cutoff_center |
282 |
static final int |
h_bond_cutoff_edge |
283 |
static final int |
h_bond_exclusion |
461 |
static final int |
h_bond_from_proton |
556 |
static final int |
h_bond_max_angle |
281 |
static final int |
h_bond_power_a |
284 |
static final int |
h_bond_power_b |
285 |
static final int |
half_bonds |
45 |
static final int |
hash_max |
22 |
static final int |
HASSETTING |
27 |
static final int |
HBACCEPT |
26 |
static final int |
HBAMASK |
50 |
static final int |
HBDMASK |
49 |
static final int |
HBDONOR |
25 |
static final int |
heavy_neighbor_cutoff |
639 |
static final int |
HETATM |
21 |
static final int |
HETMASK |
46 |
static final int |
hide_long_bonds |
560 |
static final int |
hide_underscore_names |
458 |
static final int |
ID |
10 |
static final int |
idle_delay |
52 |
static final int |
ignore_case |
414 |
static final int |
ignore_pdb_segi |
120 |
static final int |
image_copy_always |
601 |
static final int |
image_dots_per_inch |
434 |
static final int |
INIT |
710 |
static final int |
INSCODE |
42 |
static final int |
internal_feedback |
128 |
static final int |
internal_gui |
99 |
static final int |
internal_gui_control_size |
322 |
static final int |
internal_gui_mode |
341 |
static final int |
internal_gui_width |
98 |
static final int |
internal_prompt |
313 |
static final int |
isomesh_auto_state |
89 |
static final int |
keep_alive |
607 |
static final int |
LABEL |
19 |
static final int |
label_anchor |
635 |
static final int |
label_angle_digits |
531 |
static final int |
label_color |
66 |
static final int |
label_digits |
529 |
static final int |
label_dihedral_digits |
532 |
static final int |
label_distance_digits |
530 |
static final int |
label_font_id |
328 |
static final int |
label_outline_color |
467 |
static final int |
label_position |
471 |
static final int |
label_shadow_mode |
462 |
static final int |
label_size |
453 |
static final int |
legacy_mouse_zoom |
442 |
static final int |
legacy_vdw_radii |
177 |
static final int |
LEN |
0 |
static final int |
light |
10 |
static final int |
light_count |
455 |
static final int |
light2 |
456 |
static final int |
light3 |
457 |
static final int |
light4 |
463 |
static final int |
light5 |
464 |
static final int |
light6 |
465 |
static final int |
light7 |
466 |
static final int |
light8 |
489 |
static final int |
light9 |
490 |
static final int |
line_as_cylinders |
679 |
static final int |
line_color |
526 |
static final int |
line_radius |
110 |
static final int |
line_smooth |
43 |
static final int |
line_stick_helper |
391 |
static final int |
line_use_shader |
645 |
static final int |
line_width |
44 |
static final int |
log_box_selections |
133 |
static final int |
log_conformations |
134 |
static final int |
logging |
131 |
static final int |
map_auto_expand_sym |
600 |
static final int |
MASK |
24 |
static final int |
MASMASK |
48 |
static final int |
matrix_mode |
438 |
static final int |
max_threads |
261 |
static final int |
max_triangles |
83 |
static final int |
max_ups |
602 |
static final int |
mesh_as_cylinders |
678 |
static final int |
mesh_carve_cutoff |
591 |
static final int |
mesh_carve_selection |
589 |
static final int |
mesh_carve_state |
590 |
static final int |
mesh_clear_cutoff |
594 |
static final int |
mesh_clear_selection |
592 |
static final int |
mesh_clear_state |
593 |
static final int |
mesh_color |
146 |
static final int |
mesh_cutoff |
588 |
static final int |
mesh_grid_max |
595 |
static final int |
mesh_lighting |
337 |
static final int |
mesh_mode |
145 |
static final int |
mesh_negative_color |
536 |
static final int |
mesh_negative_visible |
535 |
static final int |
mesh_normals |
334 |
static final int |
mesh_quality |
204 |
static final int |
mesh_radius |
74 |
static final int |
mesh_skip |
528 |
static final int |
mesh_solvent |
205 |
static final int |
mesh_type |
335 |
static final int |
mesh_use_shader |
672 |
static final int |
mesh_width |
90 |
static final int |
min_mesh_spacing |
1 |
static final int |
MMSTEREO |
29 |
static final int |
moe_separate_chains |
558 |
static final int |
motion_bias |
628 |
static final int |
motion_hand |
631 |
static final int |
motion_linear |
630 |
static final int |
motion_power |
627 |
static final int |
motion_simple |
629 |
static final int |
mouse_grid |
587 |
static final int |
mouse_limit |
211 |
static final int |
mouse_restart_movie_delay |
404 |
static final int |
mouse_scale |
212 |
static final int |
mouse_selection_mode |
354 |
static final int |
mouse_wheel_scale |
523 |
static final int |
mouse_z_scale |
619 |
static final int |
movie_animate_by_frame |
565 |
static final int |
movie_auto_interpolate |
621 |
static final int |
movie_auto_store |
620 |
static final int |
movie_delay |
16 |
static final int |
movie_fps |
550 |
static final int |
movie_loop |
299 |
static final int |
movie_panel |
618 |
static final int |
movie_panel_row_height |
622 |
static final int |
movie_quality |
634 |
static final int |
movie_rock |
572 |
static final int |
multiplex |
385 |
static final int |
NAME |
36 |
static final int |
nb_spheres_quality |
689 |
static final int |
nb_spheres_size |
688 |
static final int |
nb_spheres_use_shader |
690 |
static final int |
neighbor_cutoff |
638 |
static final int |
no_idle |
53 |
static final int |
nonbonded_as_cylinders |
686 |
static final int |
nonbonded_size |
65 |
static final int |
nonbonded_transparency |
524 |
static final int |
nonbonded_use_shader |
685 |
static final int |
normal_workaround |
40 |
static final int |
normalize_ccp4_maps |
126 |
static final int |
normalize_grd_maps |
314 |
static final int |
normalize_o_maps |
305 |
static final int |
nvidia_bugs |
433 |
static final int |
OBJECT_ALIGNMENT |
11 |
static final int |
OBJECT_CALCULATOR |
9 |
static final int |
OBJECT_CALLBACK |
5 |
static final int |
OBJECT_CGO |
6 |
static final int |
OBJECT_GADGET |
8 |
static final int |
OBJECT_GROUP |
12 |
static final int |
OBJECT_MAPDATA |
2 |
static final int |
OBJECT_MAPMESH |
3 |
static final int |
OBJECT_MEASURE |
4 |
static final int |
OBJECT_MOLECULE |
1 |
static final int |
OBJECT_SELECTION |
-1 |
static final int |
OBJECT_SLICE |
10 |
static final int |
OBJECT_SURFACE |
7 |
static final int |
OCCUPANCY |
5 |
static final int |
offscreen_rendering_for_antialiasing |
695 |
static final int |
offscreen_rendering_multiplier |
696 |
static final int |
opaque_background |
435 |
static final int |
orthoscopic |
23 |
static final int |
overlay |
61 |
static final int |
overlay_lines |
311 |
static final int |
PARTIALCHARGE |
7 |
static final int |
pdb_conect_all |
329 |
static final int |
pdb_discrete_chains |
479 |
static final int |
pdb_echo_tags |
486 |
static final int |
pdb_formal_charges |
584 |
static final int |
pdb_hetatm_guess_valences |
562 |
static final int |
pdb_hetatm_sort |
267 |
static final int |
pdb_honor_model_number |
424 |
static final int |
pdb_ignore_conect |
632 |
static final int |
pdb_insertions_go_first |
307 |
static final int |
pdb_insure_orthogonal |
374 |
static final int |
pdb_literal_names |
190 |
static final int |
pdb_no_end_record |
301 |
static final int |
pdb_reformat_names_mode |
326 |
static final int |
pdb_retain_ids |
300 |
static final int |
pdb_standard_order |
256 |
static final int |
pdb_truncate_residue_name |
399 |
static final int |
pdb_unbond_cations |
480 |
static final int |
pdb_use_ter_records |
268 |
static final int |
pickable |
50 |
static final int |
png_file_gamma |
320 |
static final int |
png_screen_gamma |
319 |
static final int |
polar_neighbor_cutoff |
640 |
static final int |
power |
11 |
static final int |
pqr_workarounds |
387 |
static final int |
presentation |
397 |
static final int |
presentation_auto_quit |
415 |
static final int |
presentation_auto_start |
417 |
static final int |
presentation_mode |
398 |
static final int |
preserve_chempy_ids |
154 |
static final int |
PRIORITY |
3 |
static final int |
PROTEKTED |
44 |
static final int |
PROTONS |
33 |
static final int |
pymol_space_max_blue |
217 |
static final int |
pymol_space_max_green |
216 |
static final int |
pymol_space_max_red |
215 |
static final int |
pymol_space_min_factor |
218 |
static final int |
raise_exceptions |
159 |
static final int |
ramp_blend_nearby_colors |
566 |
static final int |
RANK |
16 |
static final int |
rank_assisted_sorts |
425 |
static final int |
ray_blend_blue |
318 |
static final int |
ray_blend_colors |
315 |
static final int |
ray_blend_green |
317 |
static final int |
ray_blend_red |
316 |
static final int |
ray_clip_shadows |
522 |
static final int |
ray_color_ramps |
509 |
static final int |
ray_default_renderer |
151 |
static final int |
ray_direct_shade |
375 |
static final int |
ray_hint_camera |
510 |
static final int |
ray_hint_shadow |
511 |
static final int |
ray_improve_shadows |
149 |
static final int |
ray_interior_color |
240 |
static final int |
ray_interior_mode |
476 |
static final int |
ray_interior_reflect |
340 |
static final int |
ray_interior_shadows |
244 |
static final int |
ray_interior_texture |
245 |
static final int |
ray_label_specular |
527 |
static final int |
ray_legacy_lighting |
477 |
static final int |
ray_max_passes |
350 |
static final int |
ray_opaque_background |
137 |
static final int |
ray_orthoscopic |
392 |
static final int |
ray_oversample_cutoff |
270 |
static final int |
ray_pixel_scale |
327 |
static final int |
ray_scatter |
555 |
static final int |
ray_shadow_decay_factor |
475 |
static final int |
ray_shadow_decay_range |
491 |
static final int |
ray_shadow_fudge |
207 |
static final int |
ray_shadows |
195 |
static final int |
ray_spec_local |
525 |
static final int |
ray_texture |
139 |
static final int |
ray_texture_settings |
140 |
static final int |
ray_trace_color |
546 |
static final int |
ray_trace_depth_factor |
472 |
static final int |
ray_trace_disco_factor |
474 |
static final int |
ray_trace_fog |
67 |
static final int |
ray_trace_fog_start |
69 |
static final int |
ray_trace_frames |
30 |
static final int |
ray_trace_gain |
469 |
static final int |
ray_trace_mode |
468 |
static final int |
ray_trace_persist_cutoff |
553 |
static final int |
ray_trace_slope_factor |
473 |
static final int |
ray_trace_trans_cutoff |
552 |
static final int |
ray_transparency_contrast |
352 |
static final int |
ray_transparency_oblique |
551 |
static final int |
ray_transparency_oblique_power |
554 |
static final int |
ray_transparency_shadows |
199 |
static final int |
ray_transparency_spec_cut |
312 |
static final int |
ray_transparency_specular |
201 |
static final int |
ray_triangle_fudge |
208 |
static final int |
ray_volume |
665 |
static final int |
reflect |
9 |
static final int |
reflect_power |
153 |
static final int |
render_as_cylinders |
691 |
static final int |
REP_ANGLES |
17 |
static final int |
REP_CALLBACK |
14 |
static final int |
REP_CARTOON |
5 |
static final int |
REP_CELL |
12 |
static final int |
REP_CGO |
13 |
static final int |
REP_DASHES |
10 |
static final int |
REP_DIHEDRALS |
18 |
static final int |
REP_DOTS |
9 |
static final int |
REP_ELLIPSOID |
19 |
static final int |
REP_EXTENT |
15 |
static final int |
REP_JMOL_MAX |
23 |
static final int |
REP_JMOL_PUTTY |
22 |
static final int |
REP_JMOL_TRACE |
21 |
static final int |
REP_LABELS |
3 |
static final int |
REP_LINES |
7 |
static final int |
REP_MAX |
21 |
static final int |
REP_MESH |
8 |
static final int |
REP_NBSPHERES |
4 |
static final int |
REP_NONBONDED |
11 |
static final int |
REP_RIBBON |
6 |
static final int |
REP_SLICE |
16 |
static final int |
REP_SPHERES |
1 |
static final int |
REP_STICKS |
0 |
static final int |
REP_SURFACE |
2 |
static final int |
REP_VOLUME |
20 |
static final int |
RESI |
38 |
static final int |
RESN |
41 |
static final int |
RESV |
1 |
static final int |
retain_order |
266 |
static final int |
ribbon_as_cylinders |
680 |
static final int |
ribbon_color |
235 |
static final int |
ribbon_nucleic_acid_mode |
426 |
static final int |
ribbon_power |
17 |
static final int |
ribbon_power_b |
18 |
static final int |
ribbon_radius |
20 |
static final int |
ribbon_sampling |
19 |
static final int |
ribbon_side_chain_helper |
393 |
static final int |
ribbon_smooth |
237 |
static final int |
ribbon_throw |
121 |
static final int |
ribbon_trace_atoms |
196 |
static final int |
ribbon_transparency |
666 |
static final int |
ribbon_use_shader |
681 |
static final int |
ribbon_width |
106 |
static final int |
robust_logs |
132 |
static final int |
rock |
582 |
static final int |
rock_delay |
56 |
static final int |
roving_byres |
226 |
static final int |
roving_cartoon |
228 |
static final int |
roving_delay |
224 |
static final int |
roving_detail |
233 |
static final int |
roving_isomesh |
252 |
static final int |
roving_isosurface |
253 |
static final int |
roving_labels |
223 |
static final int |
roving_lines |
220 |
static final int |
roving_map1_level |
249 |
static final int |
roving_map1_name |
246 |
static final int |
roving_map2_level |
250 |
static final int |
roving_map2_name |
247 |
static final int |
roving_map3_level |
251 |
static final int |
roving_map3_name |
248 |
static final int |
roving_nb_spheres |
234 |
static final int |
roving_nonbonded |
231 |
static final int |
roving_origin |
219 |
static final int |
roving_origin_z |
308 |
static final int |
roving_origin_z_cushion |
309 |
static final int |
roving_polar_contacts |
229 |
static final int |
roving_polar_cutoff |
230 |
static final int |
roving_ribbon |
227 |
static final int |
roving_selection |
225 |
static final int |
roving_spheres |
222 |
static final int |
roving_sticks |
221 |
static final int |
save_pdb_ss |
183 |
static final int |
scene_animation |
390 |
static final int |
scene_animation_duration |
411 |
static final int |
scene_buttons |
599 |
static final int |
scene_buttons_mode |
598 |
static final int |
scene_current_name |
396 |
static final int |
scene_frame_mode |
623 |
static final int |
scene_loop |
400 |
static final int |
scene_restart_movie_delay |
403 |
static final int |
scenes_changed |
254 |
static final int |
sculpt_angl_weight |
168 |
static final int |
sculpt_auto_center |
478 |
static final int |
sculpt_avd_excl |
505 |
static final int |
sculpt_avd_gap |
503 |
static final int |
sculpt_avd_range |
504 |
static final int |
sculpt_avd_weight |
502 |
static final int |
sculpt_bond_weight |
167 |
static final int |
sculpt_field_mask |
174 |
static final int |
sculpt_hb_overlap |
175 |
static final int |
sculpt_hb_overlap_base |
176 |
static final int |
sculpt_line_weight |
184 |
static final int |
sculpt_max_max |
500 |
static final int |
sculpt_max_min |
499 |
static final int |
sculpt_max_scale |
497 |
static final int |
sculpt_max_weight |
498 |
static final int |
sculpt_memory |
178 |
static final int |
sculpt_min_max |
496 |
static final int |
sculpt_min_min |
495 |
static final int |
sculpt_min_scale |
493 |
static final int |
sculpt_min_weight |
494 |
static final int |
sculpt_nb_interval |
273 |
static final int |
sculpt_plan_weight |
170 |
static final int |
sculpt_pyra_inv_weight |
606 |
static final int |
sculpt_pyra_weight |
169 |
static final int |
sculpt_tors_tolerance |
275 |
static final int |
sculpt_tors_weight |
274 |
static final int |
sculpt_tri_max |
484 |
static final int |
sculpt_tri_min |
483 |
static final int |
sculpt_tri_mode |
485 |
static final int |
sculpt_tri_scale |
481 |
static final int |
sculpt_tri_weight |
482 |
static final int |
sculpt_vdw_scale |
163 |
static final int |
sculpt_vdw_scale14 |
164 |
static final int |
sculpt_vdw_vis_max |
447 |
static final int |
sculpt_vdw_vis_mid |
446 |
static final int |
sculpt_vdw_vis_min |
445 |
static final int |
sculpt_vdw_vis_mode |
444 |
static final int |
sculpt_vdw_weight |
165 |
static final int |
sculpt_vdw_weight14 |
166 |
static final int |
sculpting |
161 |
static final int |
sculpting_cycles |
171 |
static final int |
sdof_drag_scale |
597 |
static final int |
secondary_structure |
157 |
static final int |
security |
197 |
static final int |
SEGI |
35 |
static final int |
sel_counter |
5 |
static final int |
selection_overlay |
81 |
static final int |
selection_round_points |
459 |
static final int |
selection_visible_only |
470 |
static final int |
selection_width |
80 |
static final int |
selection_width_max |
394 |
static final int |
selection_width_scale |
395 |
static final int |
seq_view |
353 |
static final int |
seq_view_alignment |
513 |
static final int |
seq_view_color |
362 |
static final int |
seq_view_discrete_by_state |
410 |
static final int |
seq_view_fill_char |
516 |
static final int |
seq_view_fill_color |
517 |
static final int |
seq_view_format |
357 |
static final int |
seq_view_label_color |
518 |
static final int |
seq_view_label_mode |
363 |
static final int |
seq_view_label_spacing |
355 |
static final int |
seq_view_label_start |
356 |
static final int |
seq_view_location |
358 |
static final int |
seq_view_overlay |
359 |
static final int |
seq_view_unaligned_color |
515 |
static final int |
seq_view_unaligned_mode |
514 |
static final int |
session_cache_optimize |
596 |
static final int |
session_changed |
521 |
static final int |
session_compression |
549 |
static final int |
session_file |
440 |
static final int |
session_migration |
333 |
static final int |
session_version_check |
200 |
static final int |
SETMASK |
51 |
static final int |
shader_path |
648 |
static final int |
shininess |
86 |
static final int |
show_alpha_checker |
437 |
static final int |
show_frame_rate |
617 |
static final int |
show_progress |
262 |
static final int |
simplify_display_lists |
265 |
static final int |
single_image |
15 |
static final int |
slice_dynamic_grid |
372 |
static final int |
slice_dynamic_grid_resolution |
373 |
static final int |
slice_grid |
371 |
static final int |
slice_height_map |
370 |
static final int |
slice_height_scale |
369 |
static final int |
slice_track_camera |
368 |
static final int |
slow_idle |
55 |
static final int |
smooth_color_triangle |
150 |
static final int |
smooth_half_bonds |
705 |
static final int |
solvent_radius |
4 |
static final int |
spec_count |
492 |
static final int |
spec_direct |
454 |
static final int |
spec_direct_power |
488 |
static final int |
spec_power |
25 |
static final int |
spec_reflect |
24 |
static final int |
specular |
85 |
static final int |
specular_intensity |
310 |
static final int |
sphere_color |
173 |
static final int |
sphere_mode |
421 |
static final int |
sphere_point_max_size |
422 |
static final int |
sphere_point_size |
423 |
static final int |
sphere_quality |
87 |
static final int |
sphere_scale |
155 |
static final int |
sphere_solvent |
203 |
static final int |
sphere_transparency |
172 |
static final int |
sphere_use_shader |
646 |
static final int |
spheroid_fill |
71 |
static final int |
spheroid_scale |
68 |
static final int |
spheroid_smooth |
70 |
static final int |
ss_helix_phi_exclude |
292 |
static final int |
ss_helix_phi_include |
291 |
static final int |
ss_helix_phi_target |
290 |
static final int |
ss_helix_psi_exclude |
289 |
static final int |
ss_helix_psi_include |
288 |
static final int |
ss_helix_psi_target |
287 |
static final int |
ss_strand_phi_exclude |
298 |
static final int |
ss_strand_phi_include |
297 |
static final int |
ss_strand_phi_target |
296 |
static final int |
ss_strand_psi_exclude |
295 |
static final int |
ss_strand_psi_include |
294 |
static final int |
ss_strand_psi_target |
293 |
static final int |
SSTYPE |
39 |
static final int |
state |
193 |
static final int |
state_counter_mode |
667 |
static final int |
static_singletons |
82 |
static final int |
stereo |
365 |
static final int |
stereo_angle |
41 |
static final int |
stereo_double_pump_mono |
202 |
static final int |
stereo_dynamic_strength |
609 |
static final int |
stereo_mode |
188 |
static final int |
stereo_shift |
42 |
static final int |
stick_as_cylinders |
677 |
static final int |
stick_ball |
276 |
static final int |
stick_ball_color |
604 |
static final int |
stick_ball_ratio |
277 |
static final int |
stick_color |
376 |
static final int |
stick_debug |
673 |
static final int |
stick_fixed_radius |
278 |
static final int |
stick_good_geometry |
676 |
static final int |
stick_h_scale |
605 |
static final int |
stick_nub |
48 |
static final int |
stick_overlap |
47 |
static final int |
stick_quality |
46 |
static final int |
stick_radius |
21 |
static final int |
stick_round_nub |
675 |
static final int |
stick_transparency |
198 |
static final int |
stick_use_shader |
644 |
static final int |
stick_valence_scale |
512 |
static final int |
stop_on_exceptions |
160 |
static final int |
suppress_hidden |
548 |
static final int |
surface_best |
36 |
static final int |
surface_carve_cutoff |
344 |
static final int |
surface_carve_normal_cutoff |
519 |
static final int |
surface_carve_selection |
342 |
static final int |
surface_carve_state |
343 |
static final int |
surface_cavity_cutoff |
626 |
static final int |
surface_cavity_mode |
624 |
static final int |
surface_cavity_radius |
625 |
static final int |
surface_circumscribe |
501 |
static final int |
surface_clear_cutoff |
347 |
static final int |
surface_clear_selection |
345 |
static final int |
surface_clear_state |
346 |
static final int |
surface_color |
144 |
static final int |
surface_color_smoothing |
698 |
static final int |
surface_color_smoothing_threshold |
699 |
static final int |
surface_debug |
148 |
static final int |
surface_miserable |
136 |
static final int |
surface_mode |
143 |
static final int |
surface_negative_color |
534 |
static final int |
surface_negative_visible |
533 |
static final int |
surface_normal |
37 |
static final int |
surface_optimize_subsets |
384 |
static final int |
surface_poor |
127 |
static final int |
surface_proximity |
39 |
static final int |
surface_quality |
38 |
static final int |
surface_ramp_above_mode |
364 |
static final int |
surface_residue_cutoff |
641 |
static final int |
surface_solvent |
338 |
static final int |
surface_trim_cutoff |
348 |
static final int |
surface_trim_factor |
349 |
static final int |
surface_type |
331 |
static final int |
surface_use_shader |
642 |
static final int |
suspend_undo |
708 |
static final int |
suspend_undo_atom_count |
709 |
static final int |
suspend_updates |
141 |
static final int |
swap_dsn6_bytes |
306 |
static final int |
sweep_angle |
26 |
static final int |
sweep_mode |
401 |
static final int |
sweep_phase |
402 |
static final int |
sweep_speed |
27 |
static final int |
test1 |
34 |
static final int |
test2 |
35 |
static final int |
text |
62 |
static final int |
TEXTTYPE |
17 |
static final int |
texture_fonts |
386 |
static final int |
trace_atoms_mode |
520 |
static final int |
transparency |
138 |
static final int |
transparency_global_sort |
559 |
static final int |
transparency_mode |
213 |
static final int |
transparency_picking_mode |
324 |
static final int |
triangle_max_passes |
339 |
static final int |
trim_dots |
32 |
static final int |
two_sided_lighting |
156 |
static final int |
UNIQUEID |
13 |
static final int |
unused_boolean_def_true |
419 |
static final int |
use_display_lists |
263 |
static final int |
use_shaders |
647 |
static final int |
valence |
64 |
static final int |
VALENCE |
32 |
static final int |
valence_mode |
616 |
static final int |
valence_size |
135 |
static final int |
validate_object_names |
418 |
static final int |
VDW |
6 |
static final int |
virtual_trackball |
325 |
static final int |
VISREP |
20 |
static final int |
volume_bit_depth |
649 |
static final int |
volume_color |
650 |
static final int |
volume_data_range |
652 |
static final int |
volume_layers |
651 |
static final int |
wildcard |
412 |
static final int |
wizard_prompt_mode |
366 |
static final int |
wrap_output |
191 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
MIN_RESNO |
-1000 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final byte |
ANUM |
2 |
private static final byte |
BFXN_ANGL |
6 |
private static final byte |
BTYPE |
1 |
private static final byte |
CHRG |
3 |
private static final byte |
COEF_INDICES |
5 |
private static final byte |
CONTRACTIONS |
8 |
private static final byte |
DIPOLE |
3 |
private static final byte |
EIG_VAL |
1 |
private static final byte |
EIG_VEC |
3 |
private static final byte |
EIG_VEC_COMPRESSED |
4 |
private static final byte |
GTO_EXP |
9 |
private static final byte |
ID |
-1 |
private static final byte |
MO_OCC |
2 |
private static final byte |
NORMAL_MODE |
1 |
private static final byte |
objCls1 |
1 |
private static final byte |
objCls2 |
3 |
private static final byte |
objID1 |
2 |
private static final byte |
objID2 |
4 |
private static final byte |
PCHRG |
5 |
private static final byte |
SHELL |
10 |
private static final byte |
STO_EXP |
7 |
private static final byte |
SYM |
1 |
private static final byte |
VIB_ENERGY |
2 |
private static final byte |
XYZ |
4 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
STD_ORIENTATION_ATOMIC_NUMBER_OFFSET |
1 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final float |
ROOT3 |
1.7320507764816284f |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final float |
MIN_COEF |
9.999999747378752E-5f |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
DC_LIST |
"(D1) (D4) (D6) (D2) (D3) (D5)" |
private static final java.lang.String |
DS_LIST |
"(D5) (D2) (D3) (D4) (D1)" |
private static final java.lang.String |
FS_LIST |
"(F1) (F2) (F3) (F4) (F5) (F6) (F7)" |
protected final int |
HEADER_GAMESS_OCCUPANCIES |
2 |
protected final int |
HEADER_GAMESS_ORIGINAL |
1 |
protected final int |
HEADER_GAMESS_UK_MO |
3 |
protected final int |
HEADER_NONE |
0 |
private static final java.lang.String |
P_LIST |
"(PX) (PY) (PZ)" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final double |
_1_4pi |
0.07957747154594767 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
ATOM |
2 |
private static final int |
BOND |
3 |
private static final int |
MOLECULE |
1 |
private static final int |
TRANSFORMMAT |
4 |
private static final int |
UNSET |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final int |
ASSOCIATION |
19 |
protected static final int |
CML |
1 |
protected static final int |
CRYSTAL |
2 |
protected static final int |
CRYSTAL_SCALAR |
3 |
protected static final int |
CRYSTAL_SYMMETRY |
4 |
protected static final int |
CRYSTAL_SYMMETRY_TRANSFORM3 |
5 |
protected static final int |
LATTICE_VECTOR |
18 |
protected static final int |
MODULE |
15 |
protected static final int |
MOLECULE |
6 |
protected static final int |
MOLECULE_ATOM |
8 |
protected static final int |
MOLECULE_ATOM_ARRAY |
7 |
protected static final int |
MOLECULE_ATOM_BUILTIN |
13 |
protected static final int |
MOLECULE_ATOM_SCALAR |
9 |
protected static final int |
MOLECULE_BOND |
11 |
protected static final int |
MOLECULE_BOND_ARRAY |
10 |
protected static final int |
MOLECULE_BOND_BUILTIN |
14 |
protected static final int |
MOLECULE_FORMULA |
12 |
protected static final int |
START |
0 |
protected static final int |
SYMMETRY |
17 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final float |
RAD_TO_DEG |
57.295780181884766f |
private static final double |
TWOPI |
6.283185307179586 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
SG_ALIASES |
";P2=P121;P21=P1211;C2=C121;A2=A121;I2=I121;Pm=P1m1;Pc=P1c1;Pn=P1n1;Pa=P1a1;Cm=C1m1;Am=A1m1;Im=I1m1;Cc=C1c1;An=A1n1;Ia=I1a1;Aa=A1a1;Cn=C1n1;Ic=I1c1;P2/m=P12/m1;P21/m=P121/m1;C2/m=C12/m1;A2/m=A12/m1;I2/m=I12/m1;P2/c=P12/c1;P2/n=P12/n1;P2/a=P12/a1;P21/c=P121/c1;P21/n=P121/n1;P21/a=P121/a1;C2/c=C12/c1;A2/n=A12/n1;I2/a=I12/a1;A2/a=A12/a1;C2/n=C12/n1;I2/c=I12/c1;Pm3=Pm-3;Pn3=Pn-3;Fm3=Fm-3;Fd3=Fd-3;Im3=Im-3;Pa3=Pa-3;Ia3=Ia-3;Pm3m=Pm-3m;Pn3n=Pn-3n;Pm3n=Pm-3n;Pn3m=Pn-3m;Fm3m=Fm-3m;Fm3c=Fm-3c;Fd3m=Fd-3m;Fd3c=Fd-3c;Im3m=Im-3m;Ia3d=Ia-3d;" |
Modifier and Type | Constant Field | Value |
---|---|---|
static final int |
CELL |
5 |
static final int |
END |
35 |
static final int |
LATT |
20 |
static final int |
NDIM |
10 |
static final int |
QI |
15 |
static final java.lang.String |
records |
"tit cell ndim qi lat sym spg end wma" |
static final int |
SPG |
30 |
static final int |
SYM |
25 |
static final int |
TITLE |
0 |
public static final java.lang.String |
U_LIST |
"U11U22U33U12U13U23UISO" |
static final int |
WMATRIX |
40 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
BLOCK_ATOMS |
1 |
private static final int |
BLOCK_CALC |
0 |
private static final int |
BLOCK_MAGRES |
2 |
private static final int |
BLOCK_NEW |
-2 |
private static final int |
BLOCK_NONE |
-1 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
unsupportedRecordTypes |
";ZERR;DISP;UNIT;LAUE;REM;MORE;TIME;HKLF;OMIT;SHEL;BASF;TWIN;EXTI;SWAT;HOPE;MERG;SPEC;RESI;MOVE;ANIS;AFIX;HFIX;FRAG;FEND;EXYZ;EXTI;EADP;EQIV;CONN;PART;BIND;FREE;DFIX;DANG;BUMP;SAME;SADI;CHIV;FLAT;DELU;SIMU;DEFS;ISOR;NCSY;SUMP;L.S.;CGLS;BLOC;DAMP;STIR;WGHT;FVAR;BOND;CONF;MPLA;RTAB;HTAB;LIST;ACTA;SIZE;TEMP;WPDB;FMAP;GRID;PLAN;MOLE;" |
Modifier and Type | Constant Field | Value |
---|---|---|
private final java.lang.String |
cxyz |
" x y z" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
GLOBAL_CONECT |
3 |
public static final int |
GLOBAL_DOMAINS |
5 |
public static final int |
GLOBAL_FRACTCOORD |
0 |
public static final int |
GLOBAL_ISPDB |
4 |
public static final int |
GLOBAL_SYMMETRY |
1 |
public static final int |
GLOBAL_UNITCELLS |
2 |
public static final int |
GLOBAL_VALIDATIONS |
6 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final float |
ANGSTROMS_PER_BOHR |
0.529177188873291f |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
classBase |
"org.jmol.adapter.readers." |
private static final java.lang.String |
CML_NAMESPACE_URI |
"http://www.xml-cml.org/schema" |
private static final int |
LEADER_CHAR_MAX |
64 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
PATH_KEY |
".PATH" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
PARTICLE_CHAIN |
1 |
private static final int |
PARTICLE_NONE |
0 |
private static final int |
PARTICLE_SYMOP |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
ORDER_AROMATIC |
515 |
public static final int |
ORDER_AROMATIC_DOUBLE |
514 |
public static final int |
ORDER_AROMATIC_SINGLE |
513 |
public static final int |
ORDER_COVALENT_DOUBLE |
2 |
public static final int |
ORDER_COVALENT_QUAD |
4 |
public static final int |
ORDER_COVALENT_SINGLE |
1 |
public static final int |
ORDER_COVALENT_TRIPLE |
3 |
public static final int |
ORDER_HBOND |
2048 |
public static final int |
ORDER_PARTIAL01 |
33 |
public static final int |
ORDER_PARTIAL12 |
66 |
public static final int |
ORDER_PARTIAL23 |
97 |
public static final int |
ORDER_PARTIAL32 |
100 |
public static final int |
ORDER_PYMOL_MULT |
98304 |
public static final int |
ORDER_PYMOL_SINGLE |
65536 |
public static final int |
ORDER_STEREO_FAR |
1041 |
public static final int |
ORDER_STEREO_NEAR |
1025 |
public static final int |
ORDER_UNSPECIFIED |
17 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
DATA_LABEL |
0 |
public static final int |
DATA_SAVE_IN_STATE |
4 |
public static final int |
DATA_SELECTION |
2 |
public static final int |
DATA_TYPE |
3 |
public static final int |
DATA_TYPE_AF |
1 |
public static final int |
DATA_TYPE_AFF |
2 |
public static final int |
DATA_TYPE_AFFF |
3 |
public static final int |
DATA_TYPE_LAST |
-2 |
public static final int |
DATA_TYPE_STRING |
0 |
public static final int |
DATA_TYPE_UNKNOWN |
-1 |
public static final int |
DATA_VALUE |
1 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
HAS_CLIENT |
2 |
public static final int |
HAS_DRIVER |
4 |
public static final int |
OK |
1 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
MODE_FILL_COORDS |
1 |
public static final int |
MODE_FILL_MODEL |
0 |
public static final int |
MODE_FILL_MOLECULES |
4 |
public static final int |
MODE_FILL_MULTIMODEL |
16 |
public static final int |
MODE_FILL_RADII |
2 |
public static final int |
MODE_GET_ATTACHED_HYDROGENS |
8 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final int |
leafCountMax |
2 |
static final int |
MAX_TREE_DEPTH |
100 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final byte |
PALETTE_ALTLOC |
14 |
public static final byte |
PALETTE_AMINO |
8 |
public static final byte |
PALETTE_CHAIN |
10 |
public static final byte |
PALETTE_CPK |
1 |
public static final byte |
PALETTE_ENERGY |
19 |
public static final byte |
PALETTE_FIXEDTEMP |
5 |
public static final byte |
PALETTE_FORMAL_CHARGE |
3 |
public static final byte |
PALETTE_GROUP |
75 |
public static final byte |
PALETTE_INSERTION |
15 |
public static final byte |
PALETTE_JMOL |
16 |
public static final byte |
PALETTE_MOLECULE |
77 |
public static final byte |
PALETTE_MONOMER |
76 |
public static final byte |
PALETTE_NONE |
0 |
public static final byte |
PALETTE_PARTIAL_CHARGE |
2 |
public static final byte |
PALETTE_POLYMER |
87 |
public static final byte |
PALETTE_PROPERTY |
84 |
public static final byte |
PALETTE_RASMOL |
17 |
public static final byte |
PALETTE_SHAPELY |
9 |
public static final byte |
PALETTE_STRAIGHTNESS |
86 |
public static final byte |
PALETTE_STRUCTURE |
7 |
public static final byte |
PALETTE_SURFACE |
70 |
public static final byte |
PALETTE_TEMP |
68 |
public static final byte |
PALETTE_TYPE |
18 |
public static final byte |
PALETTE_VARIABLE |
85 |
public static final byte |
PALETTE_VOLATILE |
64 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
DSSR_PATHS |
"..bulges.nts_long..coaxstacks.stems.pairs.nt*..hairpins.nts_long..hbonds.atom1_id;atom2_id..helices.pairs.nt*..iloops.nts_long..isocanonpairs.nt*..junctions.nts_long..kissingloops.hairpins.nts_long..multiplets.nts_long..nonstack.nts_long..nts.nt_id..pairs.nt*..sssegments.nts_long..stacks.nts_long..stems.pairs.nt*.." |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final float |
degreesPerRadian |
57.295780181884766f |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final boolean |
debug |
false |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
VISIBILITY_CLIPPED |
1 |
private static final int |
VISIBILITY_OFFSCREEN |
2 |
private static final int |
VISIBILITY_UNCLIPPED |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
maxOddSizeSphere |
49 |
static final int |
maxSphereDiameter |
1000 |
static final int |
maxSphereDiameter2 |
2000 |
private static final int |
SHADE_SLAB_CLIPPED |
47 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
DEFAULT |
64 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
ADDRESS_BITS_PER_WORD |
6 |
private static final int |
BITS_PER_WORD |
64 |
private static final long |
WORD_MASK |
-1L |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final int |
MODE_CUBE |
1 |
protected static final int |
MODE_JVXL |
2 |
protected static final int |
MODE_PLANES |
3 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
CONTOUR_POINT |
-1 |
public static final int |
defaultContourCount |
9 |
public static final int |
EDGE_POINT |
-3 |
private static final int |
nContourMax |
100 |
public static final int |
VERTEX_POINT |
-2 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
CONTOUR_BITSET |
1 |
public static final int |
CONTOUR_COLIX |
3 |
public static final int |
CONTOUR_COLOR |
4 |
public static final int |
CONTOUR_FDATA |
5 |
public static final int |
CONTOUR_NPOLYGONS |
0 |
public static final int |
CONTOUR_POINTS |
6 |
public static final int |
CONTOUR_VALUE |
2 |
public static final int |
defaultColorFractionBase |
35 |
public static final int |
defaultColorFractionRange |
90 |
public static final int |
defaultEdgeFractionBase |
35 |
public static final int |
defaultEdgeFractionRange |
90 |
public static final java.lang.String |
JVXL_VERSION_XML |
"2.3" |
public static final java.lang.String |
JVXL_VERSION1 |
"2.0" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
MODE_GET_COLOR_INDEXES |
2 |
public static final int |
MODE_GET_VERTICES |
1 |
public static final int |
MODE_PUT_SETS |
3 |
public static final int |
MODE_PUT_VERTICES |
4 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
TYPE_DIFF |
2 |
private static final int |
TYPE_DIFF_PAIR |
4 |
private static final int |
TYPE_FUNCTION |
0 |
private static final int |
TYPE_MAX |
3 |
private static final int |
TYPE_SUM |
1 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final double |
A0 |
0.52918 |
private static final float |
ATOMIC_ORBITAL_ZERO_CUT_OFF |
1.0000000116860974E-7f |
private static final double |
ROOT2 |
1.414214 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
POINTS_ALL |
0 |
private static final int |
POINTS_HETS |
4 |
private static final int |
POINTS_MCMC |
1 |
private static final int |
POINTS_MCSC |
3 |
private static final int |
POINTS_SCSC |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final float |
ANGSTROMS_PER_BOHR |
0.529177188873291f |
static final int |
defaultColorFractionBase |
35 |
static final int |
defaultColorFractionRange |
90 |
static final int |
defaultColorNegative |
-65536 |
static final int |
defaultColorNegativeLCAO |
-8388480 |
static final int |
defaultColorPositive |
-16776961 |
static final int |
defaultColorPositiveLCAO |
-23296 |
static final int |
defaultContourCount |
11 |
static final float |
defaultCutoff |
0.019999999552965164f |
static final int |
defaultEdgeFractionBase |
35 |
static final int |
defaultEdgeFractionRange |
90 |
static final float |
defaultLobeCutoff |
0.14000000059604645f |
static final float |
defaultMappedDataMax |
1.0f |
static final float |
defaultMappedDataMin |
0.0f |
static final float |
defaultMepCutoff |
0.10000000149011612f |
static final float |
defaultMepMax |
0.10000000149011612f |
static final float |
defaultMepMin |
-0.10000000149011612f |
static final float |
defaultOrbitalCutoff |
0.03999999910593033f |
static final float |
defaultOrbitalCutoffOld |
0.14000000059604645f |
static final float |
defaultQMElectronDensityCutoff |
0.009999999776482582f |
public static final float |
defaultQMOrbitalCutoff |
0.05000000074505806f |
static final float |
defaultSolventRadius |
1.2000000476837158f |
static final int |
HAS_MAXGRID |
256 |
static final int |
IS_POINTMAPPABLE |
512 |
static final int |
IS_SILENT |
64 |
static final int |
IS_SLABBABLE |
1024 |
public static final int |
IS_SOLVENTTYPE |
128 |
public static final int |
MEP_MAX_GRID |
40 |
public static final int |
MO_MAX_GRID |
80 |
static final int |
nContourMax |
100 |
static final int |
NO_ANISOTROPY |
32 |
static final int |
QM_TYPE_GAUSSIAN |
1 |
static final int |
QM_TYPE_NCI_PRO |
3 |
static final int |
QM_TYPE_NCI_SCF |
4 |
static final int |
QM_TYPE_SLATER |
2 |
static final int |
QM_TYPE_UNKNOWN |
0 |
static final int |
QM_TYPE_VOLUME_DATA |
5 |
public static final int |
STATE_DATA_COLORED |
3 |
public static final int |
STATE_DATA_READ |
2 |
public static final int |
STATE_INITIALIZED |
1 |
public static final int |
STATE_UNINITIALIZED |
0 |
static final int |
SURFACE_ATOMICORBITAL |
1294 |
static final int |
SURFACE_ELLIPSOID2 |
66 |
static final int |
SURFACE_ELLIPSOID3 |
67 |
static final int |
SURFACE_FUNCTIONXY |
8 |
static final int |
SURFACE_FUNCTIONXYZ |
9 |
static final int |
SURFACE_GEODESIC |
74 |
static final int |
SURFACE_INTERSECT |
1333 |
static final int |
SURFACE_LCAOCARTOON |
69 |
static final int |
SURFACE_LOBE |
68 |
public static final int |
SURFACE_LONEPAIR |
70 |
static final int |
SURFACE_MEP |
1328 |
static final int |
SURFACE_MLP |
1329 |
static final int |
SURFACE_MOLECULAR |
1203 |
static final int |
SURFACE_MOLECULARORBITAL |
1837 |
static final int |
SURFACE_NCI |
1844 |
static final int |
SURFACE_NOMAP |
1205 |
static final int |
SURFACE_NONE |
0 |
static final int |
SURFACE_PROPERTY |
1206 |
public static final int |
SURFACE_RADICAL |
71 |
static final int |
SURFACE_SASURFACE |
1196 |
static final int |
SURFACE_SOLVENT |
1195 |
static final int |
SURFACE_SPHERE |
65 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final int |
cMapSourceBRIX |
6 |
static final int |
cMapSourceCCP4 |
2 |
static final int |
cMapSourceChempyBrick |
8 |
static final int |
cMapSourceCrystallographic |
1 |
static final int |
cMapSourceDesc |
4 |
static final int |
cMapSourceFLD |
5 |
static final int |
cMapSourceGeneralPurpose |
3 |
static final int |
cMapSourceGRD |
7 |
static final int |
cMapSourceObsolete |
10 |
static final int |
cMapSourceVMDPlugin |
9 |
static final int |
OBJECT_MAPDATA |
2 |
static final int |
OBJECT_MAPMESH |
3 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final float |
ANGSTROMS_PER_BOHR |
0.529177188873291f |
static final float |
defaultCutoff |
0.019999999552965164f |
static final float |
defaultMappedDataMax |
1.0f |
static final float |
defaultMappedDataMin |
0.0f |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final double |
DEG_TO_RAD |
0.017453292519943295 |
static final double |
max_squarable_double |
1.0E150 |
static final double |
min_squarable_double |
1.0E-150 |
public static final double |
RAD_TO_DEG |
57.29577951308232 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final int |
CALC_ANGLE |
1 |
static final int |
CALC_DISTANCE |
0 |
static final int |
CALC_ES |
6 |
static final int |
CALC_MAX |
7 |
static final int |
CALC_OOP |
4 |
static final int |
CALC_STRETCH_BEND |
2 |
static final int |
CALC_TORSION |
3 |
static final int |
CALC_VDW |
5 |
public static final double |
DEG_TO_RAD |
0.017453292519943295 |
static final double |
KCAL_TO_KJ |
4.1868 |
private static final double |
PI_OVER_2 |
1.5707963267948966 |
public static final double |
RAD_TO_DEG |
57.29577951308232 |
private static final double |
TWO_PI |
6.283185307179586 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
DA_D |
68 |
public static final int |
DA_DA |
133 |
static final double |
FPAR |
143.9325 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final double |
KCAL22 |
92.1096 |
static final double |
KCAL332 |
1390.2842991599998 |
static final double |
KCAL44 |
184.2192 |
static final double |
KCAL6 |
25.1208 |
static final double |
KCAL644 |
2696.8016159999997 |
static final int |
PAR_D |
3 |
static final int |
PAR_HARD |
9 |
static final int |
PAR_R |
0 |
static final int |
PAR_RADIUS |
10 |
static final int |
PAR_THETA |
1 |
static final int |
PAR_U |
7 |
static final int |
PAR_V |
6 |
static final int |
PAR_X |
2 |
static final int |
PAR_XI |
8 |
static final int |
PAR_Z |
5 |
static final int |
PAR_ZETA |
4 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
ABI_IJ |
3 |
public static final int |
ABI_JK |
4 |
static final int |
EANGLE |
4 |
static final int |
EBOND |
2 |
static final int |
EELECTROSTATIC |
128 |
static final int |
ENERGY |
1 |
static final int |
EOOP |
32 |
static final int |
ESTRBND |
8 |
static final int |
ETORSION |
16 |
static final int |
EVDW |
64 |
public static final int |
R3 |
0 |
public static final int |
R4 |
1 |
public static final int |
R5 |
2 |
public static final int |
Raromatic |
3 |
public static final int |
TBI_AB |
4 |
public static final int |
TBI_BC |
5 |
public static final int |
TBI_CD |
6 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
A4_BNDK |
123 |
private static final int |
A4_CHRG |
124 |
private static final int |
A4_SB |
125 |
private static final int |
A4_SBDEF |
126 |
private static final int |
A4_VDW |
122 |
private static final int |
KEY_BNDK |
0 |
private static final int |
KEY_OOP |
6 |
private static final int |
KEY_PBCI |
0 |
private static final int |
KEY_SBDEF |
0 |
private static final int |
KEY_VDW |
0 |
private static final java.lang.String |
names |
"END.BCI.CHG.ANG.NDK.OND.OOP.TBN.FSB.TOR.VDW." |
private static final int |
TYPE_ANGLE |
5 |
private static final int |
TYPE_BNDK |
546 |
private static final int |
TYPE_BOND |
3 |
private static final int |
TYPE_CHRG |
34 |
private static final int |
TYPE_OOP |
13 |
private static final int |
TYPE_PBCI |
1 |
private static final int |
TYPE_SB |
21 |
private static final int |
TYPE_SBDEF |
37 |
private static final int |
TYPE_TORSION |
9 |
private static final int |
TYPE_VDW |
17 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
PT_CHARGE |
5 |
private static final int |
PT_CONNECT |
6 |
private static final int |
PT_ELEMENT |
2 |
private static final int |
TOKEN_AROMATIC |
3 |
private static final int |
TOKEN_ELEMENT_ALLYLIC |
6 |
private static final int |
TOKEN_ELEMENT_CHARGED |
1 |
private static final int |
TOKEN_ELEMENT_CONNECTED |
2 |
private static final int |
TOKEN_ELEMENT_ONLY |
0 |
private static final int |
TOKEN_ELEMENT_SP |
4 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final double |
CB |
-0.006981317007977318 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final double |
CS |
-2.0 |
static final double |
CS2 |
2.3333333333333335 |
static final double |
FSTRETCH |
71.96625 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final double |
BUFF |
0.05 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final double |
FOOP |
71.96568080495746 |
static final double |
FOOPD |
2.5120761569715815 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
MENU_NAME |
"modelkitMenu" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
ATOM_INFRAME |
1 |
public static final int |
ATOM_INFRAME_NOTHIDDEN |
9 |
public static final int |
ATOM_NOFLAGS |
-64 |
public static final int |
ATOM_NOTHIDDEN |
8 |
public static final int |
ATOM_SHAPE_VIS_MASK |
-10 |
public static final int |
ATOM_VISIBLE |
4 |
public static final int |
ATOM_VISSET |
2 |
private static final byte |
FLAG_MASK |
3 |
private static final byte |
IS_HETERO_FLAG |
2 |
public static final float |
RADIUS_GLOBAL |
16.100000381469727f |
public static final int |
RADIUS_MAX |
16 |
private static final byte |
VIBRATION_VECTOR_FLAG |
1 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final float |
almost180 |
2.9845130443573f |
public static final int |
TAINT_ATOMNAME |
0 |
public static final int |
TAINT_ATOMNO |
13 |
public static final int |
TAINT_ATOMTYPE |
1 |
public static final int |
TAINT_BONDINGRADIUS |
6 |
public static final int |
TAINT_CHAIN |
16 |
public static final int |
TAINT_COORD |
2 |
public static final int |
TAINT_ELEMENT |
3 |
public static final int |
TAINT_FORMALCHARGE |
4 |
public static final int |
TAINT_HYDROPHOBICITY |
5 |
public static final int |
TAINT_MAX |
17 |
public static final int |
TAINT_OCCUPANCY |
7 |
public static final int |
TAINT_PARTIALCHARGE |
8 |
public static final int |
TAINT_RESNO |
15 |
public static final int |
TAINT_SEQID |
14 |
public static final int |
TAINT_TEMPERATURE |
9 |
public static final int |
TAINT_VALENCE |
10 |
public static final int |
TAINT_VANDERWAALS |
11 |
public static final int |
TAINT_VIBRATION |
12 |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final int |
BOND_GROWTH_INCREMENT |
250 |
protected static final int |
MAX_BONDS_LENGTH_TO_CACHE |
5 |
protected static final int |
MAX_NUM_TO_CACHE |
200 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
INSERTION_CODE_MASK |
127 |
private static final int |
SEQUENCE_NUMBER_FLAG |
128 |
private static final int |
SEQUENCE_NUMBER_SHIFT |
8 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final double |
QConst |
-27888.0 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
labelTokenParams |
"AaBbCcDEefGgIiLlMmNnOoPpQqRrSsTtUuVvWXxxYyyZzz%%%gqW" |
public static final java.lang.String |
STANDARD_LABEL |
"%[identify]" |
private static final java.lang.String |
twoCharLabelTokenParams |
"fuv" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
NMR_DC |
1 |
public static final int |
NMR_JC |
2 |
public static final int |
NMR_NOT |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
defaultGroupCount |
32 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final float |
beta |
0.296705961227417f |
private static final byte |
C |
3 |
private static final byte |
CA |
0 |
private static final byte |
N |
2 |
private static final byte |
O |
1 |
private static final byte |
OT |
4 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final float |
maxHbondAlphaDistance |
9.0f |
private static final float |
maxHbondAlphaDistance2 |
81.0f |
private static final float |
minimumHbondDistance2 |
0.25f |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
aaPlus |
"LYSN" |
private static final java.lang.String |
aaSp2 |
"ARGN;ASNN;ASNO;ASPO;GLNN;GLNO;GLUO;HISN;HISC;PHECTRPC;TRPN;TYRC" |
private static final java.lang.String |
aaSp21 |
"ARGNE;ARGNH1;ASNNH2;GLNNE2;TRPNE1;HISNE2" |
private static final java.lang.String |
naNoH |
"A3;A1;C3;G3;I3" |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final int |
TYPE_AMINO |
1 |
protected static final int |
TYPE_CARBOHYDRATE |
3 |
protected static final int |
TYPE_NOBONDING |
0 |
protected static final int |
TYPE_NUCLEIC |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
allCarbohydrates |
",[AHR],[ALL],[AMU],[ARA],[ARB],[BDF],[BDR],[BGC],[BMA],[FCA],[FCB],[FRU],[FUC],[FUL],[GAL],[GLA],[GLC],[GXL],[GUP],[LXC],[MAN],[RAM],[RIB],[RIP],[XYP],[XYS],[CBI],[CT3],[CTR],[CTT],[LAT],[MAB],[MAL],[MLR],[MTT],[SUC],[TRE],[GCU],[MTL],[NAG],[NDG],[RHA],[SOR],[SOL],[SOE],[XYL],[A2G],[LBT],[NGA],[SIA],[SLB],[AFL],[AGC],[GLB],[NAN],[RAA]" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final byte |
C1P |
25 |
private static final byte |
C2 |
5 |
private static final byte |
C2P |
26 |
private static final byte |
C3P |
22 |
private static final byte |
C4 |
7 |
private static final byte |
C4P |
27 |
private static final byte |
C5 |
3 |
private static final byte |
C5P |
29 |
static final byte |
C6 |
1 |
private static final byte |
C8 |
10 |
private static final byte |
H3T |
20 |
private static final byte |
H5T |
18 |
private static final byte |
N1 |
4 |
private static final byte |
N2 |
17 |
private static final byte |
N3 |
6 |
private static final byte |
N4 |
14 |
private static final byte |
N6 |
16 |
private static final byte |
N7 |
9 |
private static final byte |
N9 |
11 |
private static final byte |
NP |
15 |
private static final byte |
O1P |
23 |
private static final byte |
O2 |
8 |
private static final byte |
O2P |
24 |
private static final byte |
O2Pr |
2 |
private static final byte |
O3P |
21 |
private static final byte |
O4 |
12 |
private static final byte |
O4P |
28 |
private static final byte |
O5P |
19 |
private static final byte |
O6 |
13 |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final byte |
P |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
BIRTH |
0 |
public static final int |
CLICK |
3 |
public static final int |
CLICK_EVENT |
8 |
public static final int |
DBLCLK_EVENT |
5 |
public static final int |
DBLCLK_GESTURE |
6 |
public static final int |
DEATH |
1 |
public static final int |
DRAG_EVENT |
0 |
public static final int |
DRAG_GESTURE |
0 |
public static final int |
DRIVER_NONE |
-2 |
public static final int |
FLICK_EVENT |
6 |
public static final int |
FLICK_GESTURE |
7 |
public static final int |
INVALID_GESTURE |
9 |
public static final int |
MOVE |
2 |
public static final int |
MULTI_POINT_DRAG_GESTURE |
1 |
public static final int |
RELATIVE_DRAG_EVENT |
7 |
public static final int |
RELATIVE_DRAG_GESTURE |
8 |
public static final int |
ROTATE_EVENT |
1 |
public static final int |
ROTATE_GESTURE |
2 |
public static final int |
SERVICE_LOST |
-1 |
public static final int |
SPIN_EVENT |
2 |
public static final int |
SPIN_GESTURE |
3 |
public static final int |
TOUCH_EVENT |
3 |
public static final int |
TOUCH_GESTURE |
4 |
public static final int |
ZOOM_EVENT |
4 |
public static final int |
ZOOM_GESTURE |
5 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final long |
MAXIMUM_CLICK_TIME |
200L |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
MENUITEM_HEIGHT |
20 |
private static final int |
UPDATE_ALL |
0 |
private static final int |
UPDATE_CONFIG |
1 |
protected static final int |
UPDATE_NEVER |
-1 |
private static final int |
UPDATE_SHOW |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
MENU_NAME |
"popupMenu" |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final int |
E_MINUS_D |
3 |
protected static final int |
E_MINUS_D_OVER_2 |
1 |
protected static final int |
ONE_OVER_D |
0 |
protected static final int |
ONE_OVER_ONE_PLUS_D |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final double |
CUT |
-50.0 |
private static final double |
ROOT3 |
1.7320507764816284 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final double |
NO_VALUE |
100.0 |
private static final int |
TYPE_ALL |
0 |
private static final int |
TYPE_INTER |
2 |
private static final int |
TYPE_INTRA |
1 |
private static final int |
TYPE_LIGAND |
3 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final double |
DIPOLAR_FACTOR |
1054.5717253362893 |
private static final double |
e_charge |
1.60217646E-19 |
private static final double |
h_bar_planck |
1.0545717253362894E-34 |
private static final double |
h_planck |
6.62606957E-34 |
private static final double |
J_FACTOR |
0.0167840302932219 |
private static final int |
MAGNETOGYRIC_RATIO |
1 |
private static final double |
Q_FACTOR |
2.349647144641375E8 |
private static final int |
QUADRUPOLE_MOMENT |
2 |
private static final java.lang.String |
resource |
"nmr_data.txt" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
CANONICAL_DC_LIST |
"DXX DYY DZZ DXY DXZ DYZ" |
public static final java.lang.String |
CANONICAL_DS_LIST |
"d0 d1+ d1- d2+ d2-" |
public static final java.lang.String |
CANONICAL_FC_LIST |
"XXX YYY ZZZ XYY XXY XXZ XZZ YZZ YYZ XYZ" |
public static final java.lang.String |
CANONICAL_FS_LIST |
"f0 f1+ f1- f2+ f2- f3+ f3-" |
public static final int |
DC |
4 |
public static final int |
DS |
3 |
public static final int |
FC |
6 |
public static final int |
FS |
5 |
public static final int |
GC |
8 |
public static final int |
GS |
7 |
public static final int |
HC |
10 |
public static final int |
HS |
9 |
public static final int |
IC |
12 |
public static final int |
IS |
11 |
private static final int |
MAXID |
13 |
public static final int |
P |
1 |
public static final int |
S |
0 |
public static final int |
SP |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final float |
bohr_per_angstrom |
1.8897161483764648f |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
ABSOLUTE_MIN_MESH_SIZE |
3 |
private static final int |
MIN_MESH_RENDER_SIZE |
8 |
private static final int |
MODE_ELLIPTICAL |
2 |
private static final int |
MODE_FLAT |
1 |
private static final int |
MODE_NONELLIPTICAL |
3 |
private static final int |
MODE_TUBE |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
arrowHeadBase |
4 |
private static final float |
arrowHeadOffset |
0.8999999761581421f |
private static final int |
arrowHeadTip |
5 |
private static final float |
arrowHeadWidthFactor |
2.0f |
private static final int |
center |
3 |
private static final int |
cross |
1 |
private static final int |
crossEnd |
2 |
private static final float |
crossOffset |
0.10000000149011612f |
private static final float |
crossWidth |
0.03999999910593033f |
private static final int |
cylinderBase |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
OPT_ARCS |
1 |
private static final int |
OPT_ARROWS |
5 |
private static final int |
OPT_AXES |
2 |
private static final int |
OPT_BALL |
4 |
private static final int |
OPT_COUNT |
7 |
private static final int |
OPT_DOTS |
0 |
private static final int |
OPT_FILL |
3 |
private static final int |
OPT_WIREFRAME |
6 |
private static final float |
toRadians |
0.01745329238474369f |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final float |
arrowHeadOffset |
-0.20000000298023224f |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
commandDelay |
50 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
CONTINUE |
2 |
private static final int |
EOL |
3 |
private static final int |
ERROR |
4 |
private static final int |
OK |
0 |
private static final int |
OK2 |
1 |
private static final int |
RESTART |
5 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
PAUSE_DELAY |
-100 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final int |
ERROR_axisExpected |
0 |
static final int |
ERROR_backgroundModelError |
1 |
public static final int |
ERROR_badArgumentCount |
2 |
static final int |
ERROR_badMillerIndices |
3 |
public static final int |
ERROR_badRGBColor |
4 |
static final int |
ERROR_booleanExpected |
5 |
static final int |
ERROR_booleanOrNumberExpected |
6 |
static final int |
ERROR_booleanOrWhateverExpected |
7 |
public static final int |
ERROR_cannotSet |
56 |
static final int |
ERROR_colorExpected |
8 |
static final int |
ERROR_colorOrPaletteRequired |
9 |
static final int |
ERROR_commandExpected |
10 |
static final int |
ERROR_coordinateOrNameOrExpressionRequired |
11 |
static final int |
ERROR_drawObjectNotDefined |
12 |
public static final int |
ERROR_endOfStatementUnexpected |
13 |
public static final int |
ERROR_expressionExpected |
14 |
public static final int |
ERROR_expressionOrIntegerExpected |
15 |
static final int |
ERROR_filenameExpected |
16 |
public static final int |
ERROR_fileNotFoundException |
17 |
public static final int |
ERROR_incompatibleArguments |
18 |
public static final int |
ERROR_insufficientArguments |
19 |
static final int |
ERROR_integerExpected |
20 |
static final int |
ERROR_integerOutOfRange |
21 |
public static final int |
ERROR_invalidArgument |
22 |
public static final int |
ERROR_invalidParameterOrder |
23 |
public static final int |
ERROR_keywordExpected |
24 |
public static final int |
ERROR_moCoefficients |
25 |
public static final int |
ERROR_moIndex |
26 |
public static final int |
ERROR_moModelError |
27 |
public static final int |
ERROR_moOccupancy |
28 |
public static final int |
ERROR_moOnlyOne |
29 |
public static final int |
ERROR_multipleModelsDisplayedNotOK |
30 |
static final int |
ERROR_multipleModelsNotOK |
55 |
public static final int |
ERROR_noData |
31 |
public static final int |
ERROR_noPartialCharges |
32 |
static final int |
ERROR_noUnitCell |
33 |
public static final int |
ERROR_numberExpected |
34 |
static final int |
ERROR_numberMustBe |
35 |
static final int |
ERROR_numberOutOfRange |
36 |
static final int |
ERROR_objectNameExpected |
37 |
static final int |
ERROR_planeExpected |
38 |
static final int |
ERROR_propertyNameExpected |
39 |
static final int |
ERROR_spaceGroupNotFound |
40 |
static final int |
ERROR_stringExpected |
41 |
static final int |
ERROR_stringOrIdentifierExpected |
42 |
static final int |
ERROR_tooManyPoints |
43 |
static final int |
ERROR_tooManyScriptLevels |
44 |
static final int |
ERROR_unrecognizedAtomProperty |
45 |
static final int |
ERROR_unrecognizedBondProperty |
46 |
static final int |
ERROR_unrecognizedCommand |
47 |
static final int |
ERROR_unrecognizedExpression |
48 |
static final int |
ERROR_unrecognizedObject |
49 |
static final int |
ERROR_unrecognizedParameter |
50 |
static final int |
ERROR_unrecognizedParameterWarning |
51 |
static final int |
ERROR_unrecognizedShowParameter |
52 |
public static final int |
ERROR_what |
53 |
public static final int |
ERROR_writeWhat |
54 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
saveList |
"bonds? context? coordinates? orientation? rotation? selection? state? structure?" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
qMods |
" w:0 x:1 y:2 z:3 normal:4 eulerzxz:5 eulerzyz:6 vector:-1 theta:-2 axisx:-3 axisy:-4 axisz:-5 axisangle:-6 matrix:-9" |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final int |
ERROR_badArgumentCount |
0 |
protected static final int |
ERROR_badContext |
1 |
protected static final int |
ERROR_commandExpected |
2 |
private static final int |
ERROR_coordinateExpected |
3 |
protected static final int |
ERROR_endOfCommandUnexpected |
4 |
private static final int |
ERROR_endOfExpressionExpected |
5 |
private static final int |
ERROR_identifierOrResidueSpecificationExpected |
6 |
private static final int |
ERROR_invalidAtomSpecification |
7 |
private static final int |
ERROR_invalidChainSpecification |
8 |
protected static final int |
ERROR_invalidExpressionToken |
9 |
private static final int |
ERROR_invalidModelSpecification |
10 |
protected static final int |
ERROR_missingEnd |
11 |
private static final int |
ERROR_numberExpected |
12 |
private static final int |
ERROR_numberOrVariableNameExpected |
13 |
private static final int |
ERROR_residueSpecificationExpected |
14 |
protected static final int |
ERROR_tokenExpected |
15 |
protected static final int |
ERROR_tokenUnexpected |
16 |
private static final int |
ERROR_unrecognizedExpressionToken |
17 |
protected static final int |
ERROR_unrecognizedParameter |
18 |
protected static final int |
ERROR_unrecognizedToken |
19 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
_ |
1275068449 |
public static final int |
abs |
134218250 |
public static final int |
absolute |
1073741826 |
public static final int |
acos |
134218242 |
public static final int |
add |
1275069441 |
public static final int |
addhydrogens |
1073741828 |
public static final int |
adjust |
1073741830 |
public static final int |
adpmax |
1111490561 |
public static final int |
adpmin |
1111490562 |
public static final int |
align |
1073741832 |
public static final int |
all |
1073742327 |
public static final int |
allconnected |
1073741834 |
public static final int |
allfloat |
256 |
public static final int |
allowembeddedscripts |
603979778 |
public static final int |
allowgestures |
603979780 |
public static final int |
allowkeystrokes |
603979781 |
public static final int |
allowmodelkit |
603979782 |
public static final int |
allowmoveatoms |
603979783 |
public static final int |
allowmultitouch |
603979784 |
public static final int |
allowrotateselected |
603979785 |
public static final int |
altloc |
1086324739 |
public static final int |
ambientocclusion |
553648129 |
public static final int |
ambientpercent |
553648130 |
public static final int |
amino |
2097154 |
public static final int |
andequals |
268435666 |
public static final int |
angle |
134217729 |
public static final int |
angstroms |
1073741836 |
public static final int |
animation |
4097 |
public static final int |
animationfps |
553648132 |
public static final int |
animationmode |
545259521 |
public static final int |
anisotropy |
1073741837 |
public static final int |
antialiasdisplay |
603979786 |
public static final int |
antialiasimages |
603979788 |
public static final int |
antialiastranslucent |
603979790 |
public static final int |
append |
1073741839 |
public static final int |
appendnew |
603979792 |
public static final int |
appletproxy |
545259522 |
public static final int |
applysymmetrytobonds |
603979794 |
public static final int |
arc |
1073741840 |
public static final int |
area |
1073741842 |
public static final int |
aromatic |
1075838996 |
public static final int |
array |
1275068418 |
public static final int |
arrow |
1073741846 |
public static final int |
as |
1073741848 |
public static final int |
assign |
4098 |
public static final int |
async |
1073741849 |
public static final int |
atomExpressionCommand |
12288 |
public static final int |
atomicorbital |
1073741850 |
public static final int |
atomid |
1094713346 |
public static final int |
atomindex |
1094713347 |
public static final int |
atomname |
1086326786 |
public static final int |
atomno |
1094715393 |
public static final int |
atompicking |
603979796 |
public static final int |
atomproperty |
1077936128 |
public static final int |
atoms |
1140850689 |
public static final int |
atomtype |
1086326785 |
public static final int |
atomtypes |
545259524 |
public static final int |
atomx |
1111492609 |
public static final int |
atomy |
1111492610 |
public static final int |
atomz |
1111492611 |
public static final int |
audio |
1073741851 |
public static final int |
auto |
1073741852 |
public static final int |
autobond |
603979798 |
public static final int |
autofps |
603979800 |
public static final int |
average |
96 |
public static final int |
axes |
1611272194 |
public static final int |
axescolor |
545259526 |
public static final int |
axesmode |
553648134 |
public static final int |
axesmolecular |
603979804 |
public static final int |
axesoffset |
570425345 |
public static final int |
axesorientationrasmol |
603979806 |
public static final int |
axesscale |
570425346 |
public static final int |
axesunitcell |
603979808 |
public static final int |
axeswindow |
603979810 |
public static final int |
axis |
1073741854 |
public static final int |
axis1color |
545259528 |
public static final int |
axis2color |
545259530 |
public static final int |
axis3color |
545259532 |
public static final int |
axisangle |
134217731 |
public static final int |
babel |
1073741856 |
public static final int |
babel21 |
1073741857 |
public static final int |
back |
1073741858 |
public static final int |
backbone |
1114249217 |
public static final int |
backbonesteps |
603979811 |
public static final int |
background |
1610616835 |
public static final int |
backgroundcolor |
545259534 |
public static final int |
backgroundmodel |
536870914 |
public static final int |
backlit |
1073741861 |
public static final int |
backshell |
1073741862 |
public static final int |
balls |
1073741859 |
public static final int |
barb |
1073741860 |
public static final int |
barray |
15 |
public static final int |
basemodel |
2097200 |
public static final int |
basepair |
1073741864 |
public static final int |
best |
1073741863 |
public static final int |
bin |
1275068420 |
public static final int |
binary |
1073741866 |
public static final int |
bind |
4100 |
public static final int |
bitset |
10 |
public static final int |
blockdata |
1073741868 |
public static final int |
bondcount |
1228931587 |
public static final int |
bonded |
2097155 |
public static final int |
bondingradius |
1111492618 |
public static final int |
bondingversion |
553648138 |
public static final int |
bondmode |
1610612737 |
public static final int |
bondmodeor |
603979812 |
public static final int |
bondorder |
4101 |
public static final int |
bondpicking |
603979814 |
public static final int |
bondradiusmilliangstroms |
553648136 |
public static final int |
bonds |
1677721602 |
public static final int |
bondset |
1073741870 |
public static final int |
bondtolerance |
570425348 |
public static final int |
booleanparam |
603979776 |
public static final int |
bottom |
1073741871 |
public static final int |
boundbox |
1678381065 |
public static final int |
boundboxcolor |
545259536 |
public static final int |
branch |
1073742328 |
public static final int |
breakcmd |
102407 |
public static final int |
brillouin |
1073741872 |
public static final int |
cache |
134221829 |
public static final int |
calculate |
4102 |
public static final int |
cameradepth |
570425350 |
public static final int |
cancel |
1073741874 |
public static final int |
cap |
1073741875 |
public static final int |
capture |
4103 |
public static final int |
carbohydrate |
2097188 |
public static final int |
cartoon |
1112152066 |
public static final int |
cartoonbaseedges |
603979816 |
public static final int |
cartoonladders |
603979818 |
public static final int |
cartoonribose |
603979819 |
public static final int |
cartoonrockets |
603979820 |
public static final int |
cartoonsfancy |
603979817 |
public static final int |
casecmd |
102411 |
public static final int |
catchcmd |
102412 |
public static final int |
cavity |
1073741876 |
public static final int |
cd |
20488 |
public static final int |
cell |
1094713349 |
public static final int |
celshading |
603979822 |
public static final int |
celshadingpower |
553648137 |
public static final int |
center |
12289 |
public static final int |
centerat |
4105 |
public static final int |
centroid |
1094713350 |
public static final int |
cgo |
135174 |
public static final int |
chain |
1086326788 |
public static final int |
chaincasesensitive |
603979823 |
public static final int |
chainno |
1094713351 |
public static final int |
check |
1073741878 |
public static final int |
chemical |
1073741879 |
public static final int |
chemicalshift |
1111490563 |
public static final int |
circle |
1073741880 |
public static final int |
clash |
1073741881 |
public static final int |
clear |
1073741882 |
public static final int |
clickable |
2097190 |
public static final int |
clipboard |
1073741884 |
public static final int |
col |
1275068934 |
public static final int |
collapsed |
1073741886 |
public static final int |
colon |
268435490 |
public static final int |
color |
1765808134 |
public static final int |
colorrasmol |
603979824 |
public static final int |
colorscheme |
1073741888 |
public static final int |
comma |
268435504 |
public static final int |
command |
1073741890 |
public static final int |
commands |
1073741892 |
public static final int |
comparator |
268435712 |
public static final int |
compare |
134221831 |
public static final int |
configuration |
1094717448 |
public static final int |
connect |
4106 |
public static final int |
connected |
134217736 |
public static final int |
console |
528395 |
public static final int |
constraint |
1073741894 |
public static final int |
contact |
134353926 |
public static final int |
context |
14 |
public static final int |
contextdepthmax |
553648167 |
public static final int |
continuecmd |
102408 |
public static final int |
contour |
1073741896 |
public static final int |
contourlines |
1073741898 |
public static final int |
contours |
1073741900 |
public static final int |
coord |
1073742329 |
public static final int |
corners |
1073741902 |
public static final int |
cos |
134218245 |
public static final int |
count |
1275068425 |
public static final int |
covalentradius |
1111490564 |
public static final int |
create |
1073741904 |
public static final int |
criterion |
1073741905 |
public static final int |
cross |
1275069442 |
public static final int |
crossed |
1073741906 |
public static final int |
currentlocalpath |
545259538 |
public static final int |
curve |
1073741908 |
public static final int |
cutoff |
1073741910 |
public static final int |
cylinder |
1073741912 |
public static final int |
data |
134221834 |
public static final int |
dataseparator |
545259540 |
public static final int |
debug |
536870916 |
public static final int |
debugscript |
603979825 |
public static final int |
decimal |
3 |
public static final int |
defaultanglelabel |
545259542 |
public static final int |
defaultcmd |
102413 |
public static final int |
defaultcolorscheme |
545259545 |
public static final int |
defaultdirectory |
545259546 |
public static final int |
defaultdistancelabel |
545259547 |
public static final int |
defaultdrawarrowscale |
570425352 |
public static final int |
defaultdropscript |
545259548 |
public static final int |
defaultlabelpdb |
545259543 |
public static final int |
defaultlabelxyz |
545259544 |
public static final int |
defaultlattice |
536870918 |
public static final int |
defaultloadfilter |
545259549 |
public static final int |
defaultloadscript |
545259550 |
public static final int |
defaultON |
524288 |
public static final int |
defaults |
545259552 |
public static final int |
defaultstructuredssp |
603979826 |
public static final int |
defaulttorsionlabel |
545259554 |
public static final int |
defaulttranslucent |
570425354 |
public static final int |
defaultvdw |
545259555 |
public static final int |
define |
12290 |
public static final int |
delay |
528397 |
public static final int |
delaymaximumms |
553648140 |
public static final int |
delete |
12291 |
public static final int |
density |
1073741914 |
public static final int |
deprecatedparam |
1610612736 |
public static final int |
depth |
554176526 |
public static final int |
diameter |
1073741917 |
public static final int |
diffusepercent |
553648142 |
public static final int |
dipole |
135175 |
public static final int |
dipolescale |
570425355 |
public static final int |
direction |
1073741918 |
public static final int |
disablepopupmenu |
603979827 |
public static final int |
discrete |
1073741920 |
public static final int |
displacement |
1073741922 |
public static final int |
display |
1610625028 |
public static final int |
displaycellparameters |
603979828 |
public static final int |
displayed |
2097192 |
public static final int |
distance |
1275069443 |
public static final int |
distancefactor |
1073741924 |
public static final int |
div |
1275068928 |
public static final int |
divide |
268435632 |
public static final int |
dna |
2097156 |
public static final int |
dollarsign |
1073742330 |
public static final int |
domains |
1073741925 |
public static final int |
dot |
1275069444 |
public static final int |
dotdensity |
553648143 |
public static final int |
dots |
1112150019 |
public static final int |
dotscale |
553648144 |
public static final int |
dotsselectedonly |
603979829 |
public static final int |
dotsurface |
603979830 |
public static final int |
dotted |
1073741926 |
public static final int |
downsample |
1073741928 |
public static final int |
dragselected |
603979831 |
public static final int |
draw |
135176 |
public static final int |
drawfontsize |
570425356 |
public static final int |
drawhover |
603979832 |
public static final int |
drawing |
1073741929 |
public static final int |
drawpicking |
603979833 |
public static final int |
dssp |
1073741915 |
public static final int |
dsspcalchydrogen |
603979834 |
public static final int |
dssr |
1073741916 |
public static final int |
dynamicmeasurements |
603979835 |
public static final int |
eccentricity |
1073741931 |
public static final int |
echo |
537022465 |
public static final int |
ed |
1073741932 |
public static final int |
edges |
1073741933 |
public static final int |
edsurlcutoff |
545259556 |
public static final int |
edsurlformat |
545259557 |
public static final int |
edsurlformatdiff |
545259558 |
public static final int |
element |
1086326789 |
public static final int |
elemisono |
1094713353 |
public static final int |
elemno |
1094715402 |
public static final int |
ellipsoid |
1112150020 |
public static final int |
ellipsoidarcs |
603979836 |
public static final int |
ellipsoidarrows |
603979837 |
public static final int |
ellipsoidaxes |
603979838 |
public static final int |
ellipsoidaxisdiameter |
570425357 |
public static final int |
ellipsoidball |
603979839 |
public static final int |
ellipsoiddotcount |
553648145 |
public static final int |
ellipsoiddots |
603979840 |
public static final int |
ellipsoidfill |
603979841 |
public static final int |
elsecmd |
364547 |
public static final int |
elseif |
102402 |
public static final int |
end |
102409 |
public static final int |
endifcmd |
364548 |
public static final int |
energy |
1073741934 |
public static final int |
energyunits |
545259559 |
public static final int |
error |
1073741935 |
public static final int |
eta |
1111490565 |
public static final int |
eval |
134218759 |
public static final int |
exit |
266255 |
public static final int |
exitjmol |
266256 |
public static final int |
exportscale |
570425358 |
public static final int |
expressionBegin |
1073742325 |
public static final int |
expressionEnd |
1073742326 |
public static final int |
facecenteroffset |
1073741937 |
public static final int |
file |
1228935687 |
public static final int |
filecachedirectory |
545259560 |
public static final int |
filecaching |
603979842 |
public static final int |
fill |
1073741938 |
public static final int |
filter |
1073741940 |
public static final int |
find |
1275068427 |
public static final int |
first |
1073741942 |
public static final int |
fixed |
12293 |
public static final int |
fixedtemp |
1073741946 |
public static final int |
floatparam |
570425344 |
public static final int |
floatproperty |
1111490560 |
public static final int |
flowCommand |
102400 |
public static final int |
font |
4114 |
public static final int |
fontcaching |
603979844 |
public static final int |
fontscaling |
603979845 |
public static final int |
fontsize |
1610612738 |
public static final int |
forceautobond |
603979846 |
public static final int |
forcefield |
545259561 |
public static final int |
forcmd |
134320648 |
public static final int |
formalcharge |
1631586315 |
public static final int |
format |
1287653388 |
public static final int |
fps |
1073741950 |
public static final int |
fractionalrelative |
603979848 |
public static final int |
fracx |
1111492612 |
public static final int |
fracxyz |
1145047051 |
public static final int |
fracy |
1111492613 |
public static final int |
fracz |
1111492614 |
public static final int |
frame |
4115 |
public static final int |
frank |
1611272202 |
public static final int |
from |
1073741952 |
public static final int |
front |
1073741954 |
public static final int |
frontedges |
1073741956 |
public static final int |
frontlit |
1073741958 |
public static final int |
frontonly |
1073741960 |
public static final int |
full |
1073741961 |
public static final int |
fullplane |
1073741962 |
public static final int |
fullylit |
1073741964 |
public static final int |
function |
134320141 |
public static final int |
functionxy |
1073741966 |
public static final int |
functionxyz |
1073741968 |
public static final int |
fux |
1111492615 |
public static final int |
fuxyz |
1145047053 |
public static final int |
fuy |
1111492616 |
public static final int |
fuz |
1111492617 |
public static final int |
geosurface |
1112150021 |
public static final int |
gestureswipefactor |
570425359 |
public static final int |
getproperty |
1275072526 |
public static final int |
gotocmd |
20500 |
public static final int |
greyscalerendering |
603979850 |
public static final int |
gridpoints |
1073741970 |
public static final int |
group |
1086324742 |
public static final int |
group1 |
1086324743 |
public static final int |
groupid |
1094713356 |
public static final int |
groupindex |
1094713357 |
public static final int |
halo |
1112152070 |
public static final int |
hash |
6 |
public static final int |
hbond |
1613238294 |
public static final int |
hbondsangleminimum |
570425360 |
public static final int |
hbondsbackbone |
603979852 |
public static final int |
hbondsdistancemaximum |
570425361 |
public static final int |
hbondsrasmol |
603979853 |
public static final int |
hbondssolid |
603979854 |
public static final int |
helix |
136314895 |
public static final int |
helix310 |
2097160 |
public static final int |
helixalpha |
2097159 |
public static final int |
helixpi |
2097162 |
public static final int |
helixstep |
553648146 |
public static final int |
help |
20482 |
public static final int |
helppath |
545259562 |
public static final int |
hermitelevel |
553648147 |
public static final int |
hetero |
1612709894 |
public static final int |
hidden |
2097194 |
public static final int |
hiddenlinesdashed |
603979856 |
public static final int |
hide |
12294 |
public static final int |
hidenameinpopup |
603979858 |
public static final int |
hidenavigationpoint |
603979860 |
public static final int |
hidenotselected |
603979862 |
public static final int |
highlight |
536870920 |
public static final int |
highresolution |
603979864 |
public static final int |
history |
1610616855 |
public static final int |
historylevel |
553648148 |
public static final int |
hkl |
134219265 |
public static final int |
homo |
1073741973 |
public static final int |
hover |
544771 |
public static final int |
hoverdelay |
570425362 |
public static final int |
hoverlabel |
545259563 |
public static final int |
hydrogen |
1612709900 |
public static final int |
hydrophobicity |
1113589786 |
public static final int |
id |
1073741974 |
public static final int |
identifier |
1073741824 |
public static final int |
identify |
1086324745 |
public static final int |
ifcmd |
134320649 |
public static final int |
ignore |
1073741976 |
public static final int |
image |
4120 |
public static final int |
imagestate |
603979867 |
public static final int |
implicitStringCommand |
20480 |
public static final int |
in |
1275068432 |
public static final int |
inchi |
1073741977 |
public static final int |
inchikey |
1073741978 |
public static final int |
increment |
1073741981 |
public static final int |
info |
1073741982 |
public static final int |
initialize |
266265 |
public static final int |
inline |
1073741983 |
public static final int |
inscode |
5 |
public static final int |
insertion |
1086324746 |
public static final int |
insideout |
1073741984 |
public static final int |
integer |
2 |
public static final int |
interior |
1073741986 |
public static final int |
intermolecular |
1073741990 |
public static final int |
internal |
1073741988 |
public static final int |
intersection |
134219266 |
public static final int |
intparam |
553648128 |
public static final int |
intproperty |
1094713344 |
public static final int |
intramolecular |
1073741989 |
public static final int |
invertSelected |
4122 |
public static final int |
isaromatic |
1073742331 |
public static final int |
iskiosk |
603979868 |
public static final int |
isosurface |
135180 |
public static final int |
isosurfacekey |
603979869 |
public static final int |
isosurfacepropertysmoothing |
603979870 |
public static final int |
isosurfacepropertysmoothingpower |
553648149 |
public static final int |
javascript |
134238732 |
public static final int |
jmol |
1073741991 |
public static final int |
join |
1275069446 |
public static final int |
json |
1073741992 |
public static final int |
justifymeasurements |
603979871 |
public static final int |
keys |
1140850706 |
private static final int |
keyword |
16 |
public static final int |
label |
1825200146 |
public static final int |
language |
545259564 |
public static final int |
languagetranslation |
603979872 |
public static final int |
last |
1073741993 |
public static final int |
lattice |
1073741994 |
public static final int |
lcaocartoon |
135182 |
public static final int |
leadatom |
2097165 |
public static final int |
left |
1073741996 |
public static final int |
leftbrace |
1073742332 |
public static final int |
leftdivide |
268435635 |
public static final int |
leftparen |
268435472 |
public static final int |
leftsquare |
268435520 |
public static final int |
legacyautobonding |
603979873 |
public static final int |
legacyhaddition |
603979874 |
public static final int |
legacyjavafloat |
603979875 |
public static final int |
length |
1140850691 |
public static final int |
lighting |
1073741995 |
public static final int |
line |
1073741998 |
public static final int |
linedata |
1073742000 |
public static final int |
lines |
1140850692 |
public static final int |
link |
1073741999 |
public static final int |
list |
1073742001 |
public static final int |
listf |
13 |
public static final int |
load |
134222849 |
public static final int |
loadatomdatatolerance |
570425363 |
public static final int |
loadformat |
545259565 |
public static final int |
loadligandformat |
545259566 |
public static final int |
lobe |
1073742002 |
public static final int |
log |
36869 |
public static final int |
logcommands |
603979876 |
public static final int |
logfile |
545259567 |
public static final int |
loggestures |
603979877 |
public static final int |
loglevel |
553648150 |
public static final int |
lonepair |
1073742004 |
public static final int |
loop |
528411 |
public static final int |
lp |
1073742006 |
public static final int |
lumo |
1073742008 |
public static final int |
macro |
4124 |
public static final int |
magneticshielding |
1111490566 |
public static final int |
manifest |
1073742010 |
public static final int |
mapproperty |
4125 |
public static final int |
mass |
1111490567 |
public static final int |
mathExpressionCommand |
36864 |
public static final int |
mathfunc |
134217728 |
public static final int |
mathop |
268435456 |
public static final int |
mathproperty |
1140850688 |
public static final int |
matrix3f |
11 |
public static final int |
matrix4f |
12 |
public static final int |
max |
64 |
public static final int |
maxset |
1073742014 |
public static final int |
measure |
1745489939 |
public static final int |
measureallmodels |
603979878 |
public static final int |
measurementlabels |
603979879 |
public static final int |
measurementnumbers |
1610612739 |
public static final int |
measurements |
537006096 |
public static final int |
measurementunits |
545259568 |
public static final int |
menu |
1073742015 |
public static final int |
mep |
1073742016 |
public static final int |
mesh |
1073742018 |
public static final int |
meshRibbon |
1112152071 |
public static final int |
meshscale |
553648151 |
public static final int |
message |
20485 |
public static final int |
messagestylechime |
603979880 |
public static final int |
middle |
1073742019 |
public static final int |
min |
32 |
public static final int |
minbonddistance |
570425364 |
public static final int |
minimizationcriterion |
570425365 |
public static final int |
minimizationrefresh |
603979881 |
public static final int |
minimizationsilent |
603979882 |
public static final int |
minimizationsteps |
553648152 |
public static final int |
minimize |
4126 |
public static final int |
minmaxmask |
480 |
public static final int |
minpixelselradius |
553648153 |
public static final int |
minset |
1073742020 |
public static final int |
minus |
268435616 |
public static final int |
minusMinus |
268435649 |
public static final int |
misc |
1073741824 |
public static final int |
mlp |
1073742022 |
public static final int |
mo |
1073877010 |
public static final int |
mode |
1073742024 |
public static final int |
model |
1094717454 |
public static final int |
modelbased |
1073742027 |
public static final int |
modelindex |
1094713359 |
public static final int |
modelkitmode |
603979883 |
public static final int |
modify |
1073742025 |
public static final int |
modifyorcreate |
1073742026 |
public static final int |
modo |
1111490586 |
public static final int |
modt1 |
1111490580 |
public static final int |
modt2 |
1111490581 |
public static final int |
modt3 |
1111490582 |
public static final int |
modulateoccupancy |
603979884 |
public static final int |
modulation |
1275072532 |
public static final int |
modulationscale |
570425366 |
public static final int |
modx |
1111490583 |
public static final int |
modxyz |
1145045008 |
public static final int |
mody |
1111490584 |
public static final int |
modz |
1111490585 |
public static final int |
molecular |
1073742028 |
public static final int |
molecule |
1094713360 |
public static final int |
monitorenergy |
603979885 |
public static final int |
monomer |
1094713361 |
public static final int |
morph |
1073742030 |
public static final int |
mouse |
1073742031 |
public static final int |
mousedragfactor |
570425367 |
public static final int |
mousewheelfactor |
570425368 |
public static final int |
move |
4128 |
public static final int |
moveto |
4129 |
public static final int |
movie |
1073742032 |
public static final int |
mrc |
1073742033 |
public static final int |
msms |
1073742034 |
public static final int |
mul |
1275068929 |
public static final int |
mul3 |
1275068930 |
public static final int |
multiplebondbananas |
603979886 |
public static final int |
multiplebondradiusfactor |
570425369 |
public static final int |
multiplebondspacing |
570425370 |
public static final int |
multiprocessor |
603979887 |
public static final int |
mutate |
4130 |
public static final int |
nada |
0 |
public static final int |
name |
1073742035 |
public static final int |
navfps |
570425371 |
public static final int |
navigate |
4131 |
public static final int |
navigatesurface |
603979888 |
public static final int |
navigationdepth |
570425372 |
public static final int |
navigationmode |
603979889 |
public static final int |
navigationperiodic |
603979890 |
public static final int |
navigationslab |
570425373 |
public static final int |
navigationspeed |
570425374 |
public static final int |
navx |
570425376 |
public static final int |
navy |
570425378 |
public static final int |
navz |
570425380 |
public static final int |
nbo |
1073877011 |
public static final int |
nci |
1073742036 |
public static final int |
next |
1073742037 |
public static final int |
nihresolverformat |
545259570 |
public static final int |
nmr |
1073742038 |
public static final int |
nmrpredictformat |
545259569 |
public static final int |
nmrurlformat |
545259571 |
public static final int |
noArgs |
262144 |
public static final int |
nobackshell |
1073742057 |
public static final int |
nocontourlines |
1073742039 |
public static final int |
nocross |
1073742040 |
public static final int |
nodebug |
1073742041 |
public static final int |
nodots |
1073742042 |
public static final int |
noedges |
1073742044 |
public static final int |
nofill |
1073742046 |
public static final int |
nohead |
1073742048 |
public static final int |
noload |
1073742050 |
public static final int |
nomesh |
1073742052 |
public static final int |
none |
1073742333 |
public static final int |
noplane |
1073742054 |
public static final int |
normal |
1073742056 |
public static final int |
notfrontonly |
1073742058 |
public static final int |
notriangles |
1073742060 |
public static final int |
now |
134217749 |
public static final int |
nucleic |
2097166 |
public static final int |
obj |
1073742062 |
public static final int |
object |
1073742064 |
public static final int |
occupancy |
1128269825 |
public static final int |
off |
1073742334 |
public static final int |
offset |
1073742066 |
public static final int |
offsetside |
1073742068 |
public static final int |
omega |
1111490568 |
public static final int |
on |
1073742335 |
public static final int |
once |
1073742070 |
public static final int |
only |
1073742072 |
public static final int |
opAnd |
268435552 |
public static final int |
opAND |
268435584 |
public static final int |
opaque |
1073742074 |
public static final int |
opEQ |
268435860 |
public static final int |
opGE |
268435857 |
public static final int |
opGT |
268435856 |
public static final int |
opIf |
805306401 |
public static final int |
opLE |
268435858 |
public static final int |
opLIKE |
268435862 |
public static final int |
opLT |
268435859 |
public static final int |
opNE |
268435861 |
public static final int |
opNot |
268435568 |
public static final int |
opOr |
268435536 |
public static final int |
options |
1073742075 |
public static final int |
opToggle |
268435538 |
public static final int |
opXor |
268435537 |
public static final int |
orbital |
1073742076 |
public static final int |
orientation |
1073742077 |
public static final int |
origin |
1073742078 |
public static final int |
out |
1073742079 |
public static final int |
packed |
1073742080 |
public static final int |
palindrome |
1073742082 |
public static final int |
parallel |
102436 |
public static final int |
parameters |
1073742083 |
public static final int |
paramTypes |
662700032 |
public static final int |
partialcharge |
1111492619 |
public static final int |
partialdots |
603979891 |
public static final int |
particleradius |
570425381 |
public static final int |
path |
1073742084 |
public static final int |
pathforallfiles |
545259572 |
public static final int |
pause |
20487 |
public static final int |
pdb |
1073742086 |
public static final int |
pdbaddhydrogens |
603979892 |
public static final int |
pdbgetheader |
603979893 |
public static final int |
pdbheader |
1073742088 |
public static final int |
pdbsequential |
603979894 |
public static final int |
per |
1073742336 |
public static final int |
percent |
268435634 |
public static final int |
percentvdwatom |
553648154 |
public static final int |
period |
1073742090 |
public static final int |
perpendicular |
1073742092 |
public static final int |
perper |
1073742337 |
public static final int |
perspectivedepth |
603979895 |
public static final int |
perspectivemodel |
553648155 |
public static final int |
phase |
1073742094 |
public static final int |
phi |
1111490569 |
public static final int |
phongexponent |
553648156 |
public static final int |
picking |
545259573 |
public static final int |
pickingspinrate |
553648157 |
public static final int |
pickingstyle |
545259574 |
public static final int |
picklabel |
545259576 |
public static final int |
pivot |
1140850707 |
public static final int |
planarparam |
1073742099 |
public static final int |
plane |
134217750 |
public static final int |
platformspeed |
553648158 |
public static final int |
play |
1073742096 |
public static final int |
playrev |
1073742098 |
public static final int |
plot |
4133 |
public static final int |
plot3d |
135190 |
public static final int |
plus |
268435617 |
public static final int |
plusPlus |
268435650 |
public static final int |
pmesh |
135188 |
public static final int |
pocket |
1073742100 |
public static final int |
point |
134217751 |
public static final int |
point3f |
8 |
public static final int |
point4f |
9 |
public static final int |
pointgroup |
134217762 |
public static final int |
pointgroupdistancetolerance |
570425382 |
public static final int |
pointgrouplineartolerance |
570425384 |
public static final int |
pointsperangstrom |
1073742104 |
public static final int |
polygon |
1073742106 |
public static final int |
polyhedra |
1275203608 |
public static final int |
polymer |
1094713362 |
public static final int |
polymerlength |
1094713363 |
public static final int |
pop |
1275334681 |
public static final int |
predefinedset |
2097152 |
public static final int |
preservestate |
603979896 |
public static final int |
prev |
1073742108 |
public static final int |
print |
36865 |
public static final int |
probe |
1073742109 |
public static final int |
process |
102439 |
public static final int |
prompt |
134256131 |
public static final int |
property |
1715472409 |
public static final int |
propertyatomnumbercolumncount |
553648160 |
public static final int |
propertyatomnumberfield |
553648159 |
public static final int |
propertycolorscheme |
545259578 |
public static final int |
propertydatacolumncount |
553648162 |
public static final int |
propertydatafield |
553648164 |
public static final int |
PROPERTYFLAGS |
1136656384 |
public static final int |
propselector |
268435665 |
public static final int |
protein |
2097168 |
public static final int |
psi |
1111490570 |
public static final int |
purine |
2097170 |
public static final int |
push |
1275335685 |
public static final int |
pymol |
1073742110 |
public static final int |
pyrimidine |
2097172 |
public static final int |
quaternion |
134221850 |
public static final int |
quaternionframe |
545259580 |
public static final int |
quit |
266281 |
public static final int |
rad |
1073742111 |
public static final int |
radical |
1073742112 |
public static final int |
radius |
1665140738 |
public static final int |
ramachandran |
4138 |
public static final int |
random |
134219268 |
public static final int |
range |
1073742114 |
public static final int |
rangeselected |
603979897 |
public static final int |
rasmol |
1073742116 |
public static final int |
redomove |
4139 |
public static final int |
reference |
1073742118 |
public static final int |
refresh |
266284 |
public static final int |
refreshing |
603979898 |
public static final int |
remove |
1073742119 |
public static final int |
repaintwaitms |
553648165 |
public static final int |
replace |
1275068443 |
public static final int |
reset |
4141 |
public static final int |
residue |
1073742120 |
public static final int |
resno |
1094715412 |
public static final int |
resolution |
1073742122 |
public static final int |
restore |
4142 |
public static final int |
restrict |
12295 |
public static final int |
resume |
4143 |
public static final int |
returncmd |
36866 |
public static final int |
reverse |
1140850693 |
public static final int |
reversecolor |
1073742124 |
public static final int |
rewind |
1073742125 |
public static final int |
ribbon |
1112152073 |
public static final int |
ribbonaspectratio |
553648166 |
public static final int |
ribbonborder |
603979899 |
public static final int |
right |
1073742126 |
public static final int |
rightbrace |
1073742338 |
public static final int |
rightparen |
268435473 |
public static final int |
rightsquare |
268435521 |
public static final int |
rmsd |
1073742127 |
public static final int |
rna |
2097174 |
public static final int |
rna3d |
1073742128 |
public static final int |
rock |
1073742129 |
public static final int |
rocket |
1112152074 |
public static final int |
rocketbarrels |
603979900 |
public static final int |
rotate |
528432 |
public static final int |
rotate45 |
1073742130 |
public static final int |
rotateSelected |
4145 |
public static final int |
rotation |
1073742132 |
public static final int |
rotationradius |
570425388 |
public static final int |
row |
1275068935 |
public static final int |
rubberband |
1073742134 |
public static final int |
sasurface |
1073742135 |
public static final int |
save |
4146 |
public static final int |
saved |
1073742136 |
public static final int |
saveproteinstructurestate |
603979902 |
public static final int |
scale |
1073742138 |
public static final int |
scale3d |
1610612740 |
public static final int |
scaleangstromsperinch |
570425390 |
public static final int |
scene |
1073742139 |
public static final int |
screenx |
1111490571 |
public static final int |
screenxyz |
1145047052 |
public static final int |
screeny |
1111490572 |
public static final int |
screenz |
1111490573 |
public static final int |
script |
134222850 |
public static final int |
scriptCommand |
4096 |
public static final int |
scriptqueue |
603979904 |
public static final int |
scriptreportinglevel |
553648168 |
public static final int |
search |
134218756 |
public static final int |
select |
1275082245 |
public static final int |
selectallmodels |
603979906 |
public static final int |
selected |
1113589787 |
public static final int |
selectedfloat |
224 |
public static final int |
selecthetero |
603979908 |
public static final int |
selecthydrogen |
603979910 |
public static final int |
selection |
1073742140 |
public static final int |
selectionhalos |
1611141171 |
public static final int |
semicolon |
1073742339 |
public static final int |
seqcode |
1086324747 |
public static final int |
seqid |
1094713365 |
public static final int |
sequence |
1086324744 |
public static final int |
set |
36867 |
public static final int |
setparam |
536870912 |
public static final int |
settable |
2048 |
public static final int |
shape |
1086324748 |
public static final int |
shapeCommand |
135168 |
public static final int |
shapely |
1073742144 |
public static final int |
sheet |
2097184 |
public static final int |
sheetsmoothing |
570425392 |
public static final int |
show |
134222350 |
public static final int |
showaxes |
603979914 |
public static final int |
showboundbox |
603979916 |
public static final int |
showfrank |
603979918 |
public static final int |
showhiddenselectionhalos |
603979920 |
public static final int |
showhydrogens |
603979922 |
public static final int |
showkeystrokes |
603979924 |
public static final int |
showmeasurements |
603979926 |
public static final int |
showmodvecs |
603979927 |
public static final int |
showmultiplebonds |
603979928 |
public static final int |
shownavigationpointalways |
603979930 |
public static final int |
showscript |
536870922 |
public static final int |
showtiming |
603979934 |
public static final int |
showunitcell |
603979936 |
public static final int |
showunitcelldetails |
603979937 |
public static final int |
sidechain |
2097178 |
public static final int |
sigma |
1073742146 |
public static final int |
sign |
1073742147 |
public static final int |
silent |
1073742148 |
public static final int |
sin |
134218244 |
public static final int |
site |
1094713366 |
public static final int |
size |
1140850694 |
public static final int |
slab |
554176565 |
public static final int |
slabbyatom |
603979939 |
public static final int |
slabbymolecule |
603979940 |
public static final int |
slabenabled |
603979942 |
public static final int |
slabrange |
570425393 |
public static final int |
smallmoleculemaxatoms |
553648170 |
public static final int |
smartaromatic |
603979944 |
public static final int |
smiles |
134218757 |
public static final int |
smiles2dimageformat |
545259584 |
public static final int |
smilesurlformat |
545259582 |
public static final int |
solid |
1073742150 |
public static final int |
solvent |
1612709912 |
public static final int |
solventprobe |
603979948 |
public static final int |
solventproberadius |
570425394 |
public static final int |
sort |
1275068444 |
public static final int |
spacebeforesquare |
1073742195 |
public static final int |
spacefill |
1112152075 |
public static final int |
spacegroup |
1073742152 |
public static final int |
spec_alternate |
1073742355 |
public static final int |
spec_atom |
1073742356 |
public static final int |
spec_chain |
1073742357 |
public static final int |
spec_model |
1073742358 |
public static final int |
spec_model2 |
1073742359 |
public static final int |
spec_name_pattern |
1073742360 |
public static final int |
spec_resid |
1073742361 |
public static final int |
spec_seqcode |
1073742362 |
public static final int |
spec_seqcode_range |
1073742363 |
public static final int |
specialposition |
2097196 |
public static final int |
specular |
536870924 |
public static final int |
specularexponent |
553648172 |
public static final int |
specularpercent |
553648174 |
public static final int |
specularpower |
553648176 |
public static final int |
sphere |
1073742154 |
public static final int |
spin |
1611141175 |
public static final int |
spine |
2097186 |
public static final int |
spinfps |
570425396 |
public static final int |
spinx |
570425398 |
public static final int |
spiny |
570425400 |
public static final int |
spinz |
570425402 |
public static final int |
split |
1275069447 |
public static final int |
sqrt |
134218246 |
public static final int |
squared |
1073742156 |
public static final int |
ssbond |
1611141176 |
public static final int |
ssbondsbackbone |
603979952 |
public static final int |
star |
1112152076 |
public static final int |
starwidth |
570425403 |
public static final int |
state |
1073742158 |
public static final int |
statusreporting |
603979954 |
public static final int |
stddev |
192 |
public static final int |
stdinchi |
1073742159 |
public static final int |
stdinchikey |
1073742160 |
public static final int |
step |
266298 |
public static final int |
stereo |
528443 |
public static final int |
stereodegrees |
570425404 |
public static final int |
stop |
1073742162 |
public static final int |
straightness |
1111490574 |
public static final int |
strandcount |
553648178 |
public static final int |
strandcountformeshribbon |
553648180 |
public static final int |
strandcountforstrands |
553648182 |
public static final int |
strands |
1649022989 |
public static final int |
string |
4 |
public static final int |
strparam |
545259520 |
public static final int |
strproperty |
1086324736 |
public static final int |
strucid |
1086324749 |
public static final int |
strucno |
1094713367 |
public static final int |
structure |
1639976963 |
public static final int |
strutdefaultradius |
570425406 |
public static final int |
strutlengthmaximum |
570425408 |
public static final int |
struts |
659482 |
public static final int |
strutsmultiple |
603979955 |
public static final int |
strutspacing |
553648184 |
public static final int |
sub |
1275068931 |
public static final int |
subset |
2109448 |
public static final int |
substructure |
1237320707 |
public static final int |
subsystem |
1094713368 |
public static final int |
sum |
128 |
public static final int |
sum2 |
160 |
public static final int |
supercell |
1073742163 |
public static final int |
surface |
2097180 |
public static final int |
surfacedistance |
1111490575 |
public static final int |
switchcmd |
102410 |
public static final int |
symbol |
1086326798 |
public static final int |
symmetry |
1088421903 |
public static final int |
symop |
1296041986 |
public static final int |
sync |
4156 |
public static final int |
syncmouse |
603979956 |
public static final int |
syncscript |
603979958 |
public static final int |
temperature |
1111492620 |
public static final int |
tensor |
1275068445 |
public static final int |
testflag1 |
603979960 |
public static final int |
testflag2 |
603979962 |
public static final int |
testflag3 |
603979964 |
public static final int |
testflag4 |
603979965 |
public static final int |
theta |
1111490576 |
public static final int |
thismodel |
2097182 |
public static final int |
throwcmd |
36870 |
public static final int |
ticks |
1073742164 |
public static final int |
timeout |
536875070 |
public static final int |
times |
268435633 |
public static final int |
timestimes |
268435651 |
public static final int |
title |
1073742166 |
public static final int |
titleformat |
1073742168 |
public static final int |
to |
1073742170 |
public static final int |
togglelabel |
1610612741 |
public static final int |
top |
1073742172 |
public static final int |
torsion |
1073742174 |
public static final int |
trace |
1112152078 |
public static final int |
tracealpha |
603979966 |
public static final int |
trajectory |
536870926 |
public static final int |
transform |
1073742176 |
public static final int |
translate |
4160 |
public static final int |
translateSelected |
4162 |
public static final int |
translation |
1073742178 |
public static final int |
translucent |
603979967 |
public static final int |
triangles |
1073742182 |
public static final int |
trim |
1275068932 |
public static final int |
trycmd |
364558 |
public static final int |
twistedsheets |
603979968 |
public static final int |
type |
1140850696 |
public static final int |
unaryMinus |
268435648 |
public static final int |
unbind |
4164 |
public static final int |
undo |
536870928 |
public static final int |
undomove |
4165 |
public static final int |
unitcell |
1814695966 |
public static final int |
unitcellcolor |
545259586 |
public static final int |
unitx |
1111490577 |
public static final int |
unitxyz |
1145045006 |
public static final int |
unity |
1111490578 |
public static final int |
unitz |
1111490579 |
public static final int |
url |
1073742184 |
public static final int |
useminimizationthread |
603979970 |
public static final int |
usenumberlocalization |
603979971 |
public static final int |
user |
1073742186 |
public static final int |
usercolorscheme |
536870930 |
public static final int |
val |
1073742188 |
public static final int |
valence |
1094715417 |
public static final int |
validation |
1073742189 |
public static final int |
vanderwaals |
1648363544 |
public static final int |
var |
36868 |
public static final int |
variable |
1073742190 |
public static final int |
variables |
1073742192 |
public static final int |
varray |
7 |
public static final int |
vector |
135198 |
public static final int |
vectorscale |
1648361473 |
public static final int |
vectorscentered |
603979972 |
public static final int |
vectorsymmetry |
603979973 |
public static final int |
vectortrail |
553648185 |
public static final int |
vertices |
1073742194 |
public static final int |
vibration |
4166 |
public static final int |
vibrationperiod |
570425412 |
public static final int |
vibrationscale |
570425414 |
public static final int |
vibx |
1111492626 |
public static final int |
vibxyz |
1145047055 |
public static final int |
viby |
1111492627 |
public static final int |
vibz |
1111492628 |
public static final int |
visible |
2097198 |
public static final int |
visualrange |
570425416 |
public static final int |
volume |
1312817669 |
public static final int |
w |
1140850705 |
public static final int |
waitformoveto |
603979975 |
public static final int |
whilecmd |
102406 |
public static final int |
width |
1073742196 |
public static final int |
window |
536870932 |
public static final int |
windowcentered |
603979976 |
public static final int |
wireframe |
659488 |
public static final int |
wireframerotation |
603979977 |
public static final int |
within |
134217759 |
public static final int |
write |
134221856 |
public static final int |
x |
1111492629 |
public static final int |
xyz |
1145047050 |
public static final int |
y |
1111492630 |
public static final int |
z |
1111492631 |
public static final int |
zap |
12297 |
public static final int |
zdepth |
553648186 |
public static final int |
zerobasedxyzrasmol |
603979978 |
public static final int |
zoom |
4168 |
public static final int |
zoomenabled |
603979980 |
public static final int |
zoomheight |
603979982 |
public static final int |
zoomlarge |
603979983 |
public static final int |
zoomTo |
4170 |
public static final int |
zshade |
603979984 |
public static final int |
zshadepower |
553648190 |
public static final int |
zslab |
553648188 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final int |
ERROR_invalidArgument |
22 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final float |
MIN_AXIS_LEN |
1.5f |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final short |
COLOR |
10 |
private static final java.lang.String |
FONTFACE |
"Serif" |
private static final int |
FONTSIZE |
20 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final java.lang.String |
defaultFontName |
"SansSerif" |
static final int |
defaultFontSize |
16 |
static final java.lang.String |
defaultFontStyle |
"Plain" |
public static final int |
frankMargin |
4 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
FONTFACE |
"SansSerif" |
private static final int |
FONTSIZE |
12 |
private static final java.lang.String |
FONTSTYLE |
"Plain" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
PREVIOUS_MESH_ID |
"+PREVIOUS_MESH+" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
PREVIOUS_MESH_ID |
"+PREVIOUS_MESH+" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final float |
RADIUS_MAX |
4.0f |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
MAX_BOND_CLICK_DISTANCE_SQUARED |
100 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final double |
eightPiSquared100 |
7895.6835208714865 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
PUTTY_AbsoluteLinear |
7 |
private static final int |
PUTTY_AbsoluteNonlinear |
3 |
private static final int |
PUTTY_ImpliedRMS |
8 |
private static final int |
PUTTY_NormalizedLinear |
4 |
private static final int |
PUTTY_NormalizedNonlinear |
0 |
private static final int |
PUTTY_RelativeLinear |
5 |
private static final int |
PUTTY_RelativeNonlinear |
1 |
private static final int |
PUTTY_ScaledLinear |
6 |
private static final int |
PUTTY_ScaledNonlinear |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
ALPHA |
25 |
public static final int |
ALPHA_TRIANGLE |
17 |
public static final int |
BEGIN |
2 |
public static final int |
CHAR |
23 |
public static final int |
COLOR |
6 |
public static final int |
CONE |
27 |
public static final int |
CUSTOM_CYLINDER |
15 |
public static final int |
CYLINDER |
9 |
public static final int |
DISABLE |
13 |
public static final int |
DOTWIDTH |
16 |
public static final int |
ELLIPSOID |
18 |
public static final int |
ENABLE |
12 |
public static final int |
END |
3 |
public static final int |
FONT |
19 |
public static final int |
FONT_AXES |
22 |
public static final int |
FONT_SCALE |
20 |
public static final int |
FONT_VERTEX |
21 |
public static final int |
GL_LINE_LOOP |
2 |
public static final int |
GL_LINE_STRIP |
3 |
public static final int |
GL_LINES |
1 |
public static final int |
GL_POINTS |
0 |
public static final int |
GL_TRIANGLE_FAN |
6 |
public static final int |
GL_TRIANGLE_STRIP |
5 |
public static final int |
GL_TRIANGLES |
4 |
public static final int |
INDENT |
24 |
public static final int |
JMOL_DIAMETER |
-100 |
public static final int |
JMOL_PS |
-103 |
public static final int |
JMOL_SCREEN |
-101 |
public static final int |
JMOL_UVMAP |
-102 |
private static final java.lang.String |
KEY_LIST |
"BEGIN:2 END:3 STOP:0 POINT:0 POINTS:0 LINES:1 LINE_LOOP:2 LINE_STRIP:3 TRIANGLES:4 TRIANGLE_STRIP:5 TRIANGLE_FAN:6 LINE:1 VERTEX:4 NORMAL:5 COLOR:6 LINEWIDTH:10 SAUSAGE:14 DIAMETER:-100 SCREEN:-101 UVMAP:-102 PS:-103 NEWPATH:-104 CLOSEPATH:-105 STROKE:-106 SETLINEWIDTH:-107 SCALE:-108 MOVETO:-109 LINETO:-110 SHOWPAGE:-111" |
public static final int |
LINEWIDTH |
10 |
public static final int |
NORMAL |
5 |
public static final int |
PICK_COLOR |
29 |
public static final int |
PS_CLOSEPATH |
-105 |
public static final int |
PS_LINETO |
-110 |
public static final int |
PS_MOVETO |
-109 |
public static final int |
PS_NEWPATH |
-104 |
public static final int |
PS_SCALE |
-108 |
public static final int |
PS_SETLINEWIDTH |
-107 |
public static final int |
PS_SHOWPAGE |
-111 |
public static final int |
PS_STROKE |
-106 |
public static final int |
QUADRIC |
26 |
public static final int |
RESET_NORMAL |
28 |
public static final int |
SAUSAGE |
14 |
public static final int |
SIMPLE_LINE |
1 |
public static final int |
SPHERE |
7 |
public static final int |
STOP |
0 |
public static final int |
TRICOLOR_TRIANGLE |
8 |
public static final int |
VERTEX |
4 |
public static final int |
WIDTHSCALE |
11 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final short |
DIPOLE_TYPE_ATOMS |
2 |
static final short |
DIPOLE_TYPE_BOND |
3 |
static final short |
DIPOLE_TYPE_MOLECULAR |
4 |
static final short |
DIPOLE_TYPE_POINTS |
1 |
static final short |
DIPOLE_TYPE_POINTVECTOR |
5 |
static final short |
DIPOLE_TYPE_UNKNOWN |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final short |
DEFAULT_MAD |
10 |
static final float |
DEFAULT_OFFSETSIDE |
0.4000000059604645f |
private static final float |
E_ANG_PER_DEBYE |
0.20819400250911713f |
Modifier and Type | Constant Field | Value |
---|---|---|
static final float |
SURFACE_DISTANCE_FOR_CALCULATION |
10.0f |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
MAX_OBJECT_CLICK_DISTANCE_SQUARED |
100 |
private static final int |
PT_BITSET |
3 |
private static final int |
PT_COORD |
1 |
private static final int |
PT_IDENTIFIER |
2 |
private static final int |
PT_MODEL_BASED_POINTS |
5 |
private static final int |
PT_MODEL_INDEX |
4 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
PROPERTY_MODES |
"ax ce co de eq mo on op sc tr" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final float |
CONVEX_HULL_MAX |
0.05000000074505806f |
private static final float |
DEFAULT_FACECENTEROFFSET |
0.25f |
private static final float |
DEFAULT_PLANAR_PARAM |
0.9800000190734863f |
public static final int |
EDGES_ALL |
1 |
public static final int |
EDGES_FRONT |
2 |
private static final int |
EDGES_NONE |
0 |
private static final int |
FACE_COUNT_MAX |
247 |
private static final int |
MAX_OTHER |
498 |
private static final int |
MAX_VERTICES |
250 |
private static final int |
MODE_BITSET |
4 |
private static final int |
MODE_BONDING |
1 |
private static final int |
MODE_INFO |
6 |
private static final int |
MODE_POINTS |
2 |
private static final int |
MODE_RADIUS |
3 |
private static final int |
MODE_UNITCELL |
5 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
MAX_OBJECT_CLICK_DISTANCE_SQUARED |
100 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final float |
MIN_ALIGNED |
0.1745329201221466f |
Modifier and Type | Constant Field | Value |
---|---|---|
static final java.lang.String |
UNBRACKETED_SET |
"B, C, N, O, P, S, F, Cl, Br, I, *," |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
ALL_BONDS |
"-=#$:/\\.~^`+!,&;@" |
private static final java.lang.String |
SMILES_BONDS |
"-=#$:/\\.~^`" |
public static final int |
TYPE_ANY |
81 |
public static final int |
TYPE_AROMATIC |
17 |
public static final int |
TYPE_BIO_CROSSLINK |
112 |
public static final int |
TYPE_BIO_SEQUENCE |
96 |
public static final int |
TYPE_NONE |
0 |
public static final int |
TYPE_RING |
65 |
public static final int |
TYPE_UNKNOWN |
-1 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
MODE_ARRAY |
2 |
private static final int |
MODE_ATROP |
4 |
private static final int |
MODE_BITSET |
1 |
private static final int |
MODE_MAP |
3 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final float |
radiansPerDegree |
0.01745329238474369f |
static final java.lang.String |
TYPES |
"__dat" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
SUBMODE_NESTED |
1 |
private static final int |
SUBMODE_OR |
3 |
private static final int |
SUBMODE_RINGCHECK |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
ALLENE |
2 |
public static final int |
DEFAULT |
0 |
public static final int |
OCTAHEDRAL |
6 |
public static final int |
POLYHEDRAL |
1 |
public static final int |
SEESAW |
9 |
public static final int |
SQUARE_PLANAR |
7 |
public static final int |
T_SHAPED |
8 |
public static final int |
TETRAHEDRAL |
4 |
public static final int |
TRIGONAL_BIPYRAMIDAL |
5 |
public static final int |
TRIGONAL_PYRAMIDAL |
3 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
ATOM_COUNT_MAX |
100 |
private static final int |
c2 |
16 |
private static final int |
c3 |
17 |
private static final int |
c4 |
18 |
private static final int |
c5 |
19 |
private static final int |
c6 |
20 |
private static final int |
c8 |
22 |
private static final int |
firstProper |
14 |
static final int |
OPERATION_IMPROPER_AXIS |
2 |
static final int |
OPERATION_INVERSION_CENTER |
3 |
static final int |
OPERATION_PLANE |
0 |
static final int |
OPERATION_PROPER_AXIS |
1 |
private static final int |
s10 |
10 |
private static final int |
s12 |
12 |
private static final int |
s3 |
3 |
private static final int |
s4 |
4 |
private static final int |
s5 |
5 |
private static final int |
s6 |
6 |
private static final int |
s8 |
8 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
NAME_HALL |
5 |
private static final int |
NAME_HM |
3 |
private static final int |
NAME_UNK |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final double |
twoP2 |
19.739208802178716 |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final int |
CHECK1 |
1 |
protected static final int |
CHECK2 |
2 |
protected static final int |
CHECK3 |
3 |
protected static final int |
FINISH |
-2 |
protected static final int |
INIT |
-1 |
protected static final int |
MAIN |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
ALPHA_SHIFT |
13 |
public static final short |
BLACK |
4 |
public static final short |
BLUE |
7 |
public static final short |
CHANGEABLE_MASK |
-32768 |
public static final short |
CYAN |
9 |
public static final short |
GOLD |
23 |
public static final short |
GRAY |
12 |
public static final short |
GREEN |
11 |
public static final short |
HOTPINK |
22 |
public static final short |
INHERIT_ALL |
0 |
public static final short |
INHERIT_COLOR |
1 |
public static final int |
LAST_AVAILABLE_COLIX |
2047 |
public static final short |
LIME |
14 |
public static final short |
MAGENTA |
20 |
public static final short |
MAROON |
15 |
public static final short |
NAVY |
16 |
public static final short |
OLIVE |
17 |
public static final short |
OPAQUE_MASK |
-30721 |
public static final short |
ORANGE |
5 |
public static final short |
PINK |
6 |
public static final short |
PURPLE |
18 |
public static final short |
RAW_RGB |
3 |
private static final int |
RAW_RGB_INT |
3 |
public static final short |
RED |
10 |
public static final short |
SILVER |
13 |
public static final short |
SPECIAL_COLIX_MAX |
4 |
public static final short |
TEAL |
19 |
public static final int |
TRANSLUCENT_MASK |
30720 |
public static final int |
TRANSLUCENT_SCREENED |
30720 |
public static final int |
TRANSLUCENT_SHIFT |
11 |
public static final int |
TRANSPARENT |
16384 |
public static final short |
UNMASK_CHANGEABLE_TRANSLUCENT |
2047 |
public static final short |
USE_PALETTE |
2 |
public static final short |
WHITE |
8 |
public static final short |
YELLOW |
21 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
ALT |
16 |
public static final int |
AMINO |
5 |
public static final int |
BGYOR |
1 |
public static final int |
BW |
10 |
public static final int |
BWR |
7 |
private static final java.lang.String |
BYELEMENT_JMOL |
"byelement_jmol" |
public static final java.lang.String |
BYELEMENT_PREFIX |
"byelement" |
private static final java.lang.String |
BYELEMENT_RASMOL |
"byelement_rasmol" |
private static final java.lang.String |
BYRESIDUE_AMINO |
"byresidue_amino" |
public static final java.lang.String |
BYRESIDUE_PREFIX |
"byresidue" |
private static final java.lang.String |
BYRESIDUE_SHAPELY |
"byresidue_shapely" |
public static final int |
CUSTOM |
-1 |
public static final int |
FRIENDLY |
12 |
private static final int |
GRAY |
-8355712 |
public static final int |
HIGH |
9 |
public static final int |
INHERIT |
15 |
public static final int |
JMOL |
2 |
public static final int |
LOW |
8 |
public static final int |
RASMOL |
3 |
public static final int |
RESU |
-14 |
public static final int |
ROYGB |
0 |
public static final int |
RWB |
6 |
public static final int |
SHAPELY |
4 |
public static final int |
USER |
-13 |
public static final int |
WB |
11 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final int |
DEFAULT_MAX_SIZE |
100 |
public static final java.lang.String |
ERROR_FLAG |
"#??" |
public static final java.lang.String |
NOHISTORYATALL_FLAG |
"#----" |
public static final java.lang.String |
NOHISTORYLINE_FLAG |
"#--" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
ATROPISOMER_SHIFT |
11 |
public static final int |
BOND_AROMATIC |
515 |
public static final int |
BOND_AROMATIC_DOUBLE |
514 |
public static final int |
BOND_AROMATIC_MASK |
512 |
public static final int |
BOND_AROMATIC_SINGLE |
513 |
public static final int |
BOND_COVALENT_DOUBLE |
2 |
public static final int |
BOND_COVALENT_MASK |
1023 |
public static final int |
BOND_COVALENT_QUADRUPLE |
4 |
public static final int |
BOND_COVALENT_SINGLE |
1 |
public static final int |
BOND_COVALENT_TRIPLE |
3 |
public static final int |
BOND_H_CALC |
4096 |
public static final int |
BOND_H_CALC_MASK |
28672 |
public static final int |
BOND_H_MINUS_3 |
14336 |
public static final int |
BOND_H_MINUS_4 |
16384 |
public static final int |
BOND_H_NUCLEOTIDE |
18432 |
public static final int |
BOND_H_PLUS_2 |
6144 |
public static final int |
BOND_H_PLUS_3 |
8192 |
public static final int |
BOND_H_PLUS_4 |
10240 |
public static final int |
BOND_H_PLUS_5 |
12288 |
public static final int |
BOND_H_REGULAR |
2048 |
public static final int |
BOND_HBOND_SHIFT |
11 |
public static final int |
BOND_HYDROGEN_MASK |
30720 |
public static final int |
BOND_NEW |
131072 |
public static final int |
BOND_ORDER_ANY |
65535 |
public static final int |
BOND_ORDER_NULL |
131071 |
public static final int |
BOND_ORDER_UNSPECIFIED |
17 |
public static final int |
BOND_PARTIAL_MASK |
224 |
public static final int |
BOND_PARTIAL01 |
33 |
public static final int |
BOND_PARTIAL12 |
66 |
public static final int |
BOND_PARTIAL23 |
97 |
public static final int |
BOND_PARTIAL32 |
100 |
public static final int |
BOND_PYMOL_MULT |
98304 |
public static final int |
BOND_PYMOL_NOMULT |
65536 |
public static final int |
BOND_RENDER_SINGLE |
65536 |
public static final int |
BOND_STEREO_FAR |
1041 |
public static final int |
BOND_STEREO_MASK |
1024 |
public static final int |
BOND_STEREO_NEAR |
1025 |
public static final int |
BOND_STRUT |
32768 |
public static final int |
BOND_SULFUR_MASK |
256 |
public static final int |
TYPE_ATROPISOMER |
65537 |
public static final int |
TYPE_ATROPISOMER_REV |
65538 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
firstIsotope |
4 |
public static final int |
FORMAL_CHARGE_MAX |
7 |
public static final int |
FORMAL_CHARGE_MIN |
-4 |
private static final java.lang.String |
naturalIsotopes |
"1H,12C,14N," |
public static final int |
RAD_COV_BODR_2014_02_22 |
1 |
public static final int |
RAD_COV_IONIC_OB1_100_1 |
0 |
public static final java.lang.String |
VdwPROBE |
"#VDW radii for PROBE;{_H}.vdw = 1.0;{_H and connected(_C) and not connected(within(smiles,\'[a]\'))}.vdw = 1.17;{_C}.vdw = 1.75;{_C and connected(3) and connected(_O)}.vdw = 1.65;{_N}.vdw = 1.55;{_O}.vdw = 1.4;{_P}.vdw = 1.8;{_S}.vdw = 1.8;message VDW radii for H, C, N, O, P, and S set according to Word, et al., J. Mol. Biol. (1999) 285, 1711-1733" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final byte |
ENDCAPS_FLAT |
2 |
public static final byte |
ENDCAPS_FLAT_TO_SPHERICAL |
5 |
public static final byte |
ENDCAPS_HIDDEN |
1 |
public static final byte |
ENDCAPS_NONE |
0 |
public static final byte |
ENDCAPS_OPEN_TO_SPHERICAL |
4 |
public static final byte |
ENDCAPS_SPHERICAL |
3 |
public static final int |
EXPORT_CARTESIAN |
1 |
public static final int |
EXPORT_NOT |
0 |
public static final int |
EXPORT_RAYTRACER |
2 |
public static final int |
HUGE |
-1 |
public static final int |
xGT |
4 |
public static final int |
xLT |
8 |
public static final int |
yGT |
1 |
public static final int |
yLT |
2 |
public static final int |
zGT |
16 |
public static final int |
zLT |
32 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
SCRIPT_CHECK |
0 |
private static final int |
SCRIPT_NOWAIT |
2 |
private static final int |
SCRIPT_WAIT |
1 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
maxLevel |
3 |
private static final float |
oneFifth |
1.2566370964050293f |
private static final float |
oneTenth |
0.6283185482025146f |
public static final int |
standardLevel |
3 |
private static final boolean |
VALIDATE |
true |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
LEVEL_DEBUG |
5 |
public static final int |
LEVEL_DEBUGHIGH |
6 |
public static final int |
LEVEL_ERROR |
2 |
public static final int |
LEVEL_FATAL |
1 |
public static final int |
LEVEL_INFO |
4 |
public static final int |
LEVEL_MAX |
7 |
public static final int |
LEVEL_WARN |
3 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
ASCENDER |
1 |
private static final int |
DESCENDER |
0 |
private static final int |
LAST |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
P_CHECK |
3 |
public static final int |
P_CONTOUR |
4 |
public static final int |
P_EXPLICIT_COLOR |
4 |
protected static final int |
SEED_COUNT |
25 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final double |
TWOPI |
6.283185307179586 |
public static final char |
TYPE_DISP_FOURIER |
102 |
public static final char |
TYPE_DISP_LEGENDRE |
108 |
public static final char |
TYPE_DISP_SAWTOOTH |
115 |
public static final char |
TYPE_OCC_CRENEL |
99 |
public static final char |
TYPE_OCC_FOURIER |
111 |
public static final char |
TYPE_SPIN_FOURIER |
109 |
public static final char |
TYPE_SPIN_SAWTOOTH |
116 |
public static final char |
TYPE_U_FOURIER |
117 |
public static final char |
TYPE_U_LEGENDRE |
76 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
NORMIX_GEODESIC_LEVEL |
3 |
public static final short |
NORMIX_NULL |
9999 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
maxSphereCache |
128 |
private static final int |
SDIM |
40 |
public static final int |
SHADE_INDEX_LAST |
63 |
private static final int |
SHADE_INDEX_MAX |
64 |
public static final byte |
SHADE_INDEX_NOISY_LIMIT |
56 |
public static final byte |
SHADE_INDEX_NORMAL |
52 |
private static final int |
SLIM |
20 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
INFO_A |
0 |
public static final int |
INFO_ALPHA |
3 |
public static final int |
INFO_B |
1 |
public static final int |
INFO_BETA |
4 |
public static final int |
INFO_C |
2 |
public static final int |
INFO_DIMENSIONS |
6 |
public static final int |
INFO_GAMMA |
5 |
public static final float |
SLOP |
0.019999999552965164f |
private static final float |
SLOP1 |
0.9800000190734863f |
protected static final float |
toRadians |
0.01745329238474369f |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
freeEnumSize |
2 |
private static final int |
freePointsSize |
6 |
private static final int |
freeScreensSize |
6 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
infoList |
";.............;eigenvalues..;eigenvectors.;asymmatrix...;symmatrix....;value........;isotropy.....;anisotropy...;asymmetry....;eulerzyz.....;eulerzxz.....;quaternion...;indices......;string.......;type.........;id...........;span.........;skew........." |
private static final float |
INTERACTION_FACTOR |
0.03999999910593033f |
private static final java.lang.String |
KNOWN_TYPES |
";iso........;adp........;tls-u......;tls-r......;ms.........;efg........;isc........;charge.....;quadrupole." |
private static final float |
MAGNETIC_SUSCEPTIBILITY_FACTOR |
0.009999999776482582f |
public static final int |
TYPE_ADP |
1 |
public static final int |
TYPE_CHARGE |
7 |
public static final int |
TYPE_EFG |
5 |
public static final int |
TYPE_ISC |
6 |
public static final int |
TYPE_ISO |
0 |
public static final int |
TYPE_MS |
4 |
public static final int |
TYPE_OTHER |
-1 |
public static final int |
TYPE_QUADRUPOLE |
8 |
public static final int |
TYPE_TLS_R |
3 |
public static final int |
TYPE_TLS_U |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final double |
twoPI |
6.283185307179586 |
public static final int |
TYPE_SPIN |
-2 |
public static final int |
TYPE_VIBRATION |
-1 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
ACTION_assignNew |
0 |
public static final int |
ACTION_center |
1 |
public static final int |
ACTION_clickFrank |
2 |
public static final int |
ACTION_connectAtoms |
3 |
public static final int |
ACTION_count |
47 |
public static final int |
ACTION_deleteAtom |
4 |
public static final int |
ACTION_deleteBond |
5 |
public static final int |
ACTION_depth |
6 |
public static final int |
ACTION_dragAtom |
7 |
public static final int |
ACTION_dragDrawObject |
8 |
public static final int |
ACTION_dragDrawPoint |
9 |
public static final int |
ACTION_dragLabel |
10 |
public static final int |
ACTION_dragMinimize |
11 |
public static final int |
ACTION_dragMinimizeMolecule |
12 |
public static final int |
ACTION_dragSelected |
13 |
public static final int |
ACTION_dragZ |
14 |
public static final int |
ACTION_multiTouchSimulation |
15 |
public static final int |
ACTION_navTranslate |
16 |
public static final int |
ACTION_pickAtom |
17 |
public static final int |
ACTION_pickIsosurface |
18 |
public static final int |
ACTION_pickLabel |
19 |
public static final int |
ACTION_pickMeasure |
20 |
public static final int |
ACTION_pickNavigate |
21 |
public static final int |
ACTION_pickPoint |
22 |
public static final int |
ACTION_popupMenu |
23 |
public static final int |
ACTION_reset |
24 |
public static final int |
ACTION_rotate |
25 |
public static final int |
ACTION_rotateBranch |
26 |
public static final int |
ACTION_rotateSelected |
27 |
public static final int |
ACTION_rotateZ |
28 |
public static final int |
ACTION_rotateZorZoom |
29 |
public static final int |
ACTION_select |
30 |
public static final int |
ACTION_selectAndDrag |
31 |
public static final int |
ACTION_selectAndNot |
32 |
public static final int |
ACTION_selectNone |
33 |
public static final int |
ACTION_selectOr |
34 |
public static final int |
ACTION_selectToggle |
35 |
public static final int |
ACTION_selectToggleExtended |
36 |
public static final int |
ACTION_setMeasure |
37 |
public static final int |
ACTION_slab |
38 |
public static final int |
ACTION_slabAndDepth |
39 |
public static final int |
ACTION_slideZoom |
40 |
public static final int |
ACTION_spinDrawObjectCCW |
41 |
public static final int |
ACTION_spinDrawObjectCW |
42 |
public static final int |
ACTION_stopMotion |
43 |
public static final int |
ACTION_swipe |
44 |
public static final int |
ACTION_translate |
45 |
public static final int |
ACTION_wheelZoom |
46 |
public static final float |
DEFAULT_GESTURE_SWIPE_FACTOR |
1.0f |
public static final float |
DEFAULT_MOUSE_DRAG_FACTOR |
1.0f |
public static final float |
DEFAULT_MOUSE_WHEEL_FACTOR |
1.149999976158142f |
private static final long |
MAX_DOUBLE_CLICK_MILLIS |
700L |
protected static final long |
MININUM_GESTURE_DELAY_MILLISECONDS |
10L |
public static final int |
PICKING_ASSIGN_ATOM |
32 |
public static final int |
PICKING_ASSIGN_BOND |
33 |
public static final int |
PICKING_CENTER |
3 |
public static final int |
PICKING_CONNECT |
24 |
public static final int |
PICKING_DELETE_ATOM |
7 |
public static final int |
PICKING_DELETE_BOND |
8 |
public static final int |
PICKING_DRAG_ATOM |
28 |
public static final int |
PICKING_DRAG_LIGAND |
36 |
public static final int |
PICKING_DRAG_MINIMIZE |
29 |
public static final int |
PICKING_DRAG_MINIMIZE_MOLECULE |
30 |
public static final int |
PICKING_DRAG_MOLECULE |
27 |
public static final int |
PICKING_DRAG_SELECTED |
26 |
public static final int |
PICKING_DRAW |
4 |
public static final int |
PICKING_IDENTIFY |
1 |
public static final int |
PICKING_IDENTIFY_BOND |
35 |
public static final int |
PICKING_INVERT_STEREO |
31 |
public static final int |
PICKING_LABEL |
2 |
public static final int |
PICKING_MEASURE |
18 |
public static final int |
PICKING_MEASURE_ANGLE |
20 |
public static final int |
PICKING_MEASURE_DISTANCE |
19 |
public static final int |
PICKING_MEASURE_SEQUENCE |
22 |
public static final int |
PICKING_MEASURE_TORSION |
21 |
public static final int |
PICKING_NAVIGATE |
23 |
public static final int |
PICKING_OFF |
0 |
public static final int |
PICKING_ROTATE_BOND |
34 |
public static final int |
PICKING_SELECT_ATOM |
9 |
public static final int |
PICKING_SELECT_CHAIN |
11 |
public static final int |
PICKING_SELECT_ELEMENT |
17 |
public static final int |
PICKING_SELECT_GROUP |
10 |
public static final int |
PICKING_SELECT_MODEL |
16 |
public static final int |
PICKING_SELECT_MOLECULE |
12 |
public static final int |
PICKING_SELECT_POLYMER |
13 |
public static final int |
PICKING_SELECT_SITE |
15 |
public static final int |
PICKING_SELECT_STRUCTURE |
14 |
public static final int |
PICKING_SPIN |
5 |
public static final int |
PICKING_STRUTS |
25 |
public static final int |
PICKING_SYMMETRY |
6 |
public static final int |
PICKINGSTYLE_MEASURE_OFF |
5 |
public static final int |
PICKINGSTYLE_MEASURE_ON |
4 |
public static final int |
PICKINGSTYLE_SELECT_CHIME |
0 |
public static final int |
PICKINGSTYLE_SELECT_DRAG |
3 |
public static final int |
PICKINGSTYLE_SELECT_JMOL |
0 |
public static final int |
PICKINGSTYLE_SELECT_PFAAT |
2 |
public static final int |
PICKINGSTYLE_SELECT_RASMOL |
1 |
private static final int |
SLIDE_ZOOM_X_PERCENT |
98 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final int |
FRAME_FIRST |
-1 |
static final int |
FRAME_LAST |
1 |
static final int |
MODEL_CURRENT |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
DELPHI_BINARY_MAGIC_NUMBER |
"\u0014\u0000\u0000\u0000" |
public static final java.lang.String |
JPEG_CONTINUE_STRING |
" #Jmol...\u0000" |
public static final java.lang.String |
PMESH_BINARY_MAGIC_NUMBER |
"PM\u0001\u0000" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
ADD_HYDROGEN_TITLE |
"Viewer.AddHydrogens" |
public static final java.lang.String |
allowedQuaternionFrames |
"RC;RP;a;b;c;n;p;q;x;" |
public static final int |
ALPHA_CARBON_VISIBILITY_FLAG |
1040384 |
public static final float |
ANGSTROMS_PER_BOHR |
0.529177188873291f |
public static final int |
argbsIsosurfaceNegative |
-6283184 |
public static final int |
argbsIsosurfacePositive |
-11525984 |
public static final byte |
ATOMID_ALPHA_CARBON |
2 |
public static final int |
ATOMID_ALPHA_ONLY_MASK |
4 |
public static final byte |
ATOMID_AMINO_NITROGEN |
1 |
public static final byte |
ATOMID_C1_PRIME |
12 |
public static final byte |
ATOMID_C2 |
33 |
public static final byte |
ATOMID_C2_PRIME |
11 |
public static final byte |
ATOMID_C3_PRIME |
9 |
public static final byte |
ATOMID_C4 |
35 |
public static final byte |
ATOMID_C4_PRIME |
8 |
public static final byte |
ATOMID_C5 |
36 |
public static final byte |
ATOMID_C5_PRIME |
7 |
public static final byte |
ATOMID_C5M |
45 |
public static final byte |
ATOMID_C6 |
37 |
public static final byte |
ATOMID_C7 |
49 |
public static final byte |
ATOMID_C8 |
40 |
public static final byte |
ATOMID_CARBONYL_CARBON |
3 |
public static final byte |
ATOMID_CARBONYL_OD1 |
14 |
public static final byte |
ATOMID_CARBONYL_OD2 |
15 |
public static final byte |
ATOMID_CARBONYL_OE1 |
16 |
public static final byte |
ATOMID_CARBONYL_OE2 |
17 |
public static final byte |
ATOMID_CARBONYL_OXYGEN |
4 |
public static final int |
ATOMID_DISTINGUISHING_ATOM_MAX |
14 |
public static final byte |
ATOMID_H3T_TERMINUS |
88 |
public static final byte |
ATOMID_H5T_TERMINUS |
72 |
public static final byte |
ATOMID_HO3_PRIME |
89 |
public static final byte |
ATOMID_HO5_PRIME |
90 |
public static final byte |
ATOMID_N1 |
32 |
public static final byte |
ATOMID_N2 |
43 |
public static final byte |
ATOMID_N3 |
34 |
public static final byte |
ATOMID_N4 |
42 |
public static final byte |
ATOMID_N6 |
44 |
public static final byte |
ATOMID_N7 |
39 |
public static final byte |
ATOMID_N9 |
41 |
public static final int |
ATOMID_NUCLEIC_MASK |
8128 |
public static final byte |
ATOMID_NUCLEIC_PHOSPHORUS |
13 |
public static final byte |
ATOMID_O1 |
5 |
public static final byte |
ATOMID_O1P |
74 |
public static final byte |
ATOMID_O2 |
38 |
public static final byte |
ATOMID_O2_PRIME |
79 |
public static final byte |
ATOMID_O2P |
76 |
public static final byte |
ATOMID_O3_PRIME |
10 |
public static final byte |
ATOMID_O4 |
47 |
public static final byte |
ATOMID_O4_PRIME |
78 |
public static final byte |
ATOMID_O5_PRIME |
6 |
public static final byte |
ATOMID_O5T_TERMINUS |
73 |
public static final byte |
ATOMID_O6 |
46 |
public static final byte |
ATOMID_OP1 |
75 |
public static final byte |
ATOMID_OP2 |
77 |
public static final int |
ATOMID_PHOSPHORUS_ONLY_MASK |
8192 |
public static final int |
ATOMID_PROTEIN_MASK |
14 |
public static final byte |
ATOMID_S4 |
48 |
public static final byte |
ATOMID_TERMINATING_OXT |
64 |
public static final int |
AXES_DEFAULT_FONTSIZE |
14 |
public static final java.lang.String |
CACTUS_FILE_TYPES |
";alc;cdxml;cerius;charmm;cif;cml;ctx;gjf;gromacs;hyperchem;jme;maestro;mol;mol2;sybyl2;mrv;pdb;sdf;sdf3000;sln;smiles;xyz;" |
public static final java.lang.String |
copyright |
"(C) 2015 Jmol Development" |
public static final short |
DEFAULT_BOND_MILLIANGSTROM_RADIUS |
150 |
public static final float |
DEFAULT_BOND_RADIUS |
0.15000000596046448f |
public static final float |
DEFAULT_BOND_TOLERANCE |
0.44999998807907104f |
public static final java.lang.String |
DEFAULT_FONTFACE |
"SansSerif" |
public static final java.lang.String |
DEFAULT_FONTSTYLE |
"Plain" |
public static final java.lang.String |
DEFAULT_HELP_PATH |
"http://chemapps.stolaf.edu/jmol/docs/index.htm" |
public static final float |
DEFAULT_MAX_CONNECT_DISTANCE |
1.0E8f |
public static final float |
DEFAULT_MIN_BOND_DISTANCE |
0.4000000059604645f |
public static final float |
DEFAULT_MIN_CONNECT_DISTANCE |
0.10000000149011612f |
public static final int |
DEFAULT_PERCENT_VDW_ATOM |
23 |
public static final float |
DEFAULT_STRUT_RADIUS |
0.30000001192092896f |
public static final int |
DNA_MASK |
65480 |
public static final int |
ECHO_BOTTOM |
1 |
public static final int |
ECHO_MIDDLE |
2 |
public static final int |
ECHO_TOP |
0 |
public static final int |
ECHO_XY |
3 |
public static final int |
ECHO_XYZ |
4 |
public static final java.lang.String |
EMBEDDED_SCRIPT_TAG |
"**** Jmol Embedded Script ****" |
public static final float |
ENC_CALC_MAX_DIST |
3.0f |
public static final int |
ENV_CALC_MAX_LEVEL |
3 |
public static final java.lang.String |
EXPORT_DRIVER_LIST |
"Idtf;Maya;Povray;Vrml;X3d;Stl;Tachyon;Obj" |
public static final int |
GROUPID_AMINO_MAX |
24 |
public static final int |
GROUPID_ARGININE |
2 |
public static final int |
GROUPID_ASPARAGINE |
3 |
public static final int |
GROUPID_ASPARTATE |
4 |
public static final int |
GROUPID_CYSTEINE |
5 |
public static final int |
GROUPID_GLUTAMATE |
7 |
public static final int |
GROUPID_GLUTAMINE |
6 |
public static final int |
GROUPID_HISTIDINE |
9 |
private static final int |
GROUPID_ION_MAX |
48 |
private static final int |
GROUPID_ION_MIN |
46 |
public static final int |
GROUPID_LYSINE |
12 |
public static final int |
GROUPID_NUCLEIC_MAX |
42 |
public static final int |
GROUPID_PROLINE |
15 |
public static final int |
GROUPID_SOLVENT_MIN |
45 |
public static final int |
GROUPID_TRYPTOPHAN |
19 |
public static final int |
GROUPID_WATER |
42 |
public static final java.lang.String |
IMAGE_OR_SCENE |
";jpg;jpeg;jpg64;jpeg64;gif;gift;pdf;ppm;png;pngj;pngt;scene;" |
public static final java.lang.String |
IMAGE_TYPES |
";jpg;jpeg;jpg64;jpeg64;gif;gift;pdf;ppm;png;pngj;pngt;" |
public static final java.lang.String |
JPEG_EXTENSIONS |
";jpg;jpeg;jpg64;jpeg64;" |
public static final int |
JSV_CLOSE |
77 |
public static final int |
JSV_NOT |
-1 |
public static final int |
JSV_SELECT |
14 |
public static final int |
JSV_SEND_C13SIMULATE |
35 |
public static final int |
JSV_SEND_H1SIMULATE |
28 |
public static final int |
JSV_SEND_JDXMOL |
0 |
public static final int |
JSV_SETPEAKS |
7 |
public static final int |
JSV_STRUCTURE |
21 |
private static final int |
LABEL_CENTERED |
256 |
public static final int |
LABEL_DEFAULT_FONTSIZE |
13 |
public static final int |
LABEL_DEFAULT_X_OFFSET |
4 |
public static final int |
LABEL_DEFAULT_Y_OFFSET |
4 |
private static final int |
LABEL_EXPLICIT |
64 |
public static final int |
LABEL_FLAGS |
63 |
private static final int |
LABEL_FLAGX_OFFSET_SHIFT |
21 |
private static final int |
LABEL_FLAGY_OFFSET_SHIFT |
11 |
public static final int |
LABEL_MAXIMUM_FONTSIZE |
63 |
public static final int |
LABEL_MINIMUM_FONTSIZE |
6 |
private static final int |
LABEL_OFFSET_MASK |
1023 |
public static final int |
LABEL_OFFSET_MAX |
500 |
public static final int |
LABEL_POINTER_BACKGROUND |
2 |
private static final int |
LABEL_POINTER_FLAGS |
3 |
public static final int |
LABEL_POINTER_NONE |
0 |
public static final int |
LABEL_POINTER_ON |
1 |
private static final int |
LABEL_ZPOS_FLAGS |
48 |
public static final int |
LABEL_ZPOS_FRONT |
32 |
public static final int |
LABEL_ZPOS_GROUP |
16 |
public static final java.lang.String |
LOAD_ATOM_DATA_TYPES |
";xyz;vxyz;vibration;temperature;occupancy;partialcharge;" |
public static final short |
madMultipleBondSmallMaximum |
500 |
public static final int |
MAXIMUM_AUTO_BOND_COUNT |
20 |
public static final int |
MEASURE_DEFAULT_FONTSIZE |
15 |
public static final int |
MINIMIZATION_ATOM_MAX |
200 |
public static final float |
MINIMIZE_FIXED_RANGE |
5.0f |
public static final java.lang.String |
MODELKIT_ZAP_STRING |
"5\n\nC 0 0 0\nH .63 .63 .63\nH -.63 -.63 .63\nH -.63 .63 -.63\nH .63 -.63 -.63" |
public static final java.lang.String |
MODELKIT_ZAP_TITLE |
"Jmol Model Kit" |
public static final int |
MOUSE_NONE |
-1 |
public static final byte |
MULTIBOND_ALWAYS |
3 |
public static final byte |
MULTIBOND_NEVER |
0 |
public static final byte |
MULTIBOND_NOTSMALL |
2 |
public static final byte |
MULTIBOND_WIREFRAME |
1 |
public static final int |
NBO_CONFIG |
70 |
public static final int |
NBO_MODEL |
42 |
public static final int |
NBO_RUN |
49 |
public static final int |
NBO_SEARCH |
63 |
public static final int |
NBO_VIEW |
56 |
public static final java.lang.String |
NOTE_SCRIPT_FILE |
"NOTE: file recognized as a script file: " |
public static final boolean |
officialRelease |
false |
public static final java.lang.String |
PDB_ANNOTATIONS |
";dssr;rna3d;dom;val;" |
public static final int |
PURINE_MASK |
153957 |
public static final int |
PYRIMIDINE_MASK |
108186 |
public static final float |
radiansPerDegree |
0.01745329238474369f |
public static final java.lang.String |
REPAINT_IGNORE |
"\u0001## REPAINT_IGNORE ##" |
public static final int |
RNA_MASK |
196663 |
public static final java.lang.String |
SCRIPT_COMPLETED |
"Script completed" |
public static final java.lang.String |
SCRIPT_EDITOR_IGNORE |
"\u0001## EDITOR_IGNORE ##" |
public static final int |
SHAPE_AXES |
34 |
public static final int |
SHAPE_BACKBONE |
9 |
public static final int |
SHAPE_BALLS |
0 |
public static final int |
SHAPE_BBCAGE |
32 |
public static final int |
SHAPE_CARTOON |
11 |
public static final int |
SHAPE_CGO |
23 |
public static final int |
SHAPE_CONTACT |
25 |
public static final int |
SHAPE_DIPOLES |
17 |
public static final int |
SHAPE_DOTS |
16 |
public static final int |
SHAPE_DRAW |
22 |
public static final int |
SHAPE_ECHO |
31 |
public static final int |
SHAPE_ELLIPSOIDS |
20 |
public static final int |
SHAPE_FRANK |
36 |
public static final int |
SHAPE_GEOSURFACE |
19 |
public static final int |
SHAPE_HALOS |
8 |
public static final int |
SHAPE_HOVER |
35 |
public static final int |
SHAPE_HSTICKS |
2 |
public static final int |
SHAPE_ISOSURFACE |
24 |
public static final int |
SHAPE_LABELS |
5 |
private static final int |
SHAPE_LAST_ATOM_VIS_FLAG |
26 |
public static final int |
SHAPE_LCAOCARTOON |
26 |
public static final int |
SHAPE_MAX |
37 |
public static final int |
SHAPE_MAX_HAS_ID |
32 |
public static final int |
SHAPE_MAX_HAS_SETVIS |
33 |
public static final int |
SHAPE_MAX_MESH_COLLECTION |
30 |
public static final int |
SHAPE_MAX_SECONDARY |
16 |
public static final int |
SHAPE_MAX_SIZE_ZERO_ON_RESTRICT |
21 |
public static final int |
SHAPE_MAX_SPECIAL |
23 |
public static final int |
SHAPE_MAX_SURFACE |
30 |
public static final int |
SHAPE_MEASURES |
6 |
public static final int |
SHAPE_MESHRIBBON |
13 |
public static final int |
SHAPE_MIN_HAS_ID |
21 |
public static final int |
SHAPE_MIN_HAS_SETVIS |
8 |
public static final int |
SHAPE_MIN_SECONDARY |
9 |
public static final int |
SHAPE_MIN_SPECIAL |
16 |
public static final int |
SHAPE_MIN_SURFACE |
24 |
public static final int |
SHAPE_MO |
27 |
public static final int |
SHAPE_NBO |
28 |
public static final int |
SHAPE_PLOT3D |
30 |
public static final int |
SHAPE_PMESH |
29 |
public static final int |
SHAPE_POLYHEDRA |
21 |
public static final int |
SHAPE_RIBBONS |
14 |
public static final int |
SHAPE_ROCKETS |
15 |
public static final int |
SHAPE_SSSTICKS |
3 |
public static final int |
SHAPE_STARS |
7 |
public static final int |
SHAPE_STICKS |
1 |
public static final int |
SHAPE_STRANDS |
12 |
public static final int |
SHAPE_STRUTS |
4 |
public static final int |
SHAPE_TRACE |
10 |
public static final int |
SHAPE_UCCAGE |
33 |
public static final int |
SHAPE_VECTORS |
18 |
public static final int |
SMILES_AROMATIC_DEFINED |
128 |
public static final int |
SMILES_AROMATIC_DOUBLE |
512 |
public static final int |
SMILES_AROMATIC_MMFF94 |
768 |
public static final int |
SMILES_AROMATIC_PLANAR |
1024 |
public static final int |
SMILES_AROMATIC_STRICT |
256 |
public static final int |
SMILES_FIRST_MATCH_ONLY |
8 |
public static final int |
SMILES_GEN_ATOM_COMMENT |
131072 |
public static final int |
SMILES_GEN_BIO |
1048576 |
public static final int |
SMILES_GEN_BIO_ALLOW_UNMATCHED_RINGS |
3145728 |
public static final int |
SMILES_GEN_BIO_COMMENT |
17825792 |
public static final int |
SMILES_GEN_BIO_COV_CROSSLINK |
5242880 |
public static final int |
SMILES_GEN_BIO_HH_CROSSLINK |
9437184 |
public static final int |
SMILES_GEN_BIO_NOCOMMENTS |
34603008 |
public static final int |
SMILES_GEN_EXPLICIT_H |
4096 |
public static final int |
SMILES_GEN_POLYHEDRAL |
65536 |
public static final int |
SMILES_GEN_TOPOLOGY |
8192 |
public static final int |
SMILES_GROUP_BY_MODEL |
67108864 |
public static final int |
SMILES_IGNORE_ATOM_CLASS |
2048 |
public static final int |
SMILES_IGNORE_STEREOCHEMISTRY |
32 |
public static final int |
SMILES_INVERT_STEREOCHEMISTRY |
64 |
public static final int |
SMILES_NO_AROMATIC |
16 |
public static final int |
SMILES_TYPE_OPENSMARTS |
7 |
public static final int |
SMILES_TYPE_OPENSMILES |
5 |
public static final int |
SMILES_TYPE_SMARTS |
2 |
public static final int |
SMILES_TYPE_SMILES |
1 |
public static final java.lang.String |
STATE_VERSION_STAMP |
"# Jmol state version " |
public static final int |
TEXT_ALIGN_CENTER |
8 |
private static final int |
TEXT_ALIGN_FLAGS |
12 |
public static final int |
TEXT_ALIGN_LEFT |
4 |
public static final int |
TEXT_ALIGN_NONE |
0 |
public static final int |
TEXT_ALIGN_RIGHT |
12 |
private static final int |
TEXT_ALIGN_SHIFT |
2 |
public static final int |
UNITID_ATOM |
4 |
public static final int |
UNITID_INSCODE |
8 |
public static final int |
UNITID_MODEL |
1 |
public static final int |
UNITID_RESIDUE |
2 |
public static final int |
UNITID_TRIM |
16 |
public static final int |
VIS_BACKBONE_FLAG |
8192 |
public static final int |
VIS_BALLS_FLAG |
16 |
public static final int |
VIS_BOND_FLAG |
32 |
public static final int |
VIS_CARTOON_FLAG |
32768 |
public static final int |
VIS_LABEL_FLAG |
512 |
public static final int |
XY_ZTOP |
100 |
public static final java.lang.String |
ZAP_TITLE |
"zapped" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
MIN_DELAY_MS |
20 |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final java.lang.String |
SCENE_TAG |
"###scene.spt###" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
atomExpression |
"<atom selection>" |
private static final int |
PROP_ANIMATION_INFO |
5 |
private static final int |
PROP_APPLET_INFO |
0 |
private static final int |
PROP_ATOM_INFO |
14 |
private static final int |
PROP_AUXILIARY_INFO |
24 |
private static final int |
PROP_BOND_INFO |
15 |
private static final int |
PROP_BOUNDBOX_INFO |
25 |
private static final int |
PROP_CENTER_INFO |
10 |
private static final int |
PROP_CHAIN_INFO |
16 |
private static final int |
PROP_CONSOLE_TEXT |
37 |
private static final int |
PROP_COUNT |
45 |
private static final int |
PROP_DATA_INFO |
26 |
private static final int |
PROP_DOM_INFO |
42 |
private static final int |
PROP_ERROR_MESSAGE |
33 |
private static final int |
PROP_EVALUATE |
28 |
private static final int |
PROP_EXTRACT_MODEL |
20 |
private static final int |
PROP_FILE_INFO |
32 |
private static final int |
PROP_FILECONTENTS |
4 |
private static final int |
PROP_FILECONTENTS_PATH |
3 |
private static final int |
PROP_FILEHEADER |
2 |
private static final int |
PROP_FILENAME |
1 |
private static final int |
PROP_IMAGE |
27 |
private static final int |
PROP_ISOSURFACE_DATA |
36 |
private static final int |
PROP_ISOSURFACE_INFO |
35 |
private static final int |
PROP_JMOL_STATUS |
21 |
private static final int |
PROP_JMOL_VIEWER |
22 |
private static final int |
PROP_JSPECVIEW |
38 |
private static final int |
PROP_LIGAND_INFO |
7 |
private static final int |
PROP_MEASUREMENT_INFO |
9 |
private static final int |
PROP_MENU |
29 |
private static final int |
PROP_MESSAGE_QUEUE |
23 |
private static final int |
PROP_MINIMIZATION_INFO |
30 |
private static final int |
PROP_MODEL_INFO |
6 |
private static final int |
PROP_MOLECULE_INFO |
18 |
private static final int |
PROP_MOUSE_INFO |
34 |
private static final int |
PROP_NMR_INFO |
40 |
private static final int |
PROP_ORIENTATION_INFO |
11 |
private static final int |
PROP_POINTGROUP_INFO |
31 |
private static final int |
PROP_POLYMER_INFO |
17 |
private static final int |
PROP_SCRIPT_QUEUE_INFO |
39 |
private static final int |
PROP_SERVICE |
44 |
private static final int |
PROP_SHAPE_INFO |
8 |
private static final int |
PROP_STATE_INFO |
19 |
private static final int |
PROP_TRANSFORM_INFO |
12 |
private static final int |
PROP_VAL_INFO |
43 |
private static final int |
PROP_VAR_INFO |
41 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
FALSE |
0 |
private static final int |
TRUE |
1 |
private static final int |
UNKNOWN |
-1 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
MAX_ACTION_UNDO |
100 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
OBJ_AXIS1 |
1 |
public static final int |
OBJ_AXIS2 |
2 |
public static final int |
OBJ_AXIS3 |
3 |
public static final int |
OBJ_BACKGROUND |
0 |
public static final int |
OBJ_BOUNDBOX |
4 |
public static final int |
OBJ_FRANK |
6 |
public static final int |
OBJ_MAX |
7 |
public static final int |
OBJ_UNITCELL |
5 |
private static final java.lang.String |
objectNameList |
"background axis1 axis2 axis3 boundbox unitcell frank " |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
SYNC_DISABLE |
3 |
public static final int |
SYNC_DRIVER |
1 |
public static final int |
SYNC_ENABLE |
4 |
public static final int |
SYNC_OFF |
0 |
public static final int |
SYNC_SLAVE |
2 |
public static final int |
SYNC_STEREO |
5 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final float |
DEFAULT_CAMERA_DEPTH |
3.0f |
static final int |
DEFAULT_NAV_FPS |
10 |
static final boolean |
DEFAULT_PERSPECTIVE_DEPTH |
true |
static final int |
DEFAULT_PERSPECTIVE_MODEL |
11 |
static final int |
DEFAULT_SPIN_FPS |
30 |
static final int |
DEFAULT_SPIN_Y |
30 |
public static final int |
DEFAULT_STEREO_DEGREES |
-5 |
public static final float |
DEFAULT_VISUAL_RANGE |
5.0f |
public static final double |
degreesPerRadian |
57.29577951308232 |
public static final int |
MAXIMUM_ZOOM_PERCENTAGE |
200000 |
private static final int |
MAXIMUM_ZOOM_PERSPECTIVE_DEPTH |
10000 |
public static final int |
MODE_NAVIGATION |
1 |
public static final int |
MODE_PERSPECTIVE_PYMOL |
2 |
public static final int |
MODE_STANDARD |
0 |
public static final int |
NAV_MODE_IGNORE |
-2 |
public static final int |
NAV_MODE_NEWXY |
2 |
public static final int |
NAV_MODE_NEWXYZ |
3 |
public static final int |
NAV_MODE_NEWZ |
4 |
public static final int |
NAV_MODE_NONE |
0 |
public static final int |
NAV_MODE_RESET |
1 |
public static final int |
NAV_MODE_ZOOMED |
-1 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
MODE_3D |
0 |
private static final int |
MODE_4D_WX |
1 |
private static final int |
MODE_4D_WY |
2 |
private static final int |
MODE_4D_WZ |
3 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
SYNC_GRAPHICS_MESSAGE |
"GET_GRAPHICS" |
public static final java.lang.String |
SYNC_NO_GRAPHICS_MESSAGE |
"SET_GRAPHICS_OFF" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
ALT |
8 |
public static final int |
BUTTON_MASK |
28 |
public static final int |
BUTTON_MODIFIER_MASK |
63 |
public static final int |
CLICK |
32768 |
public static final int |
COUNT_MASK |
768 |
public static final int |
CTRL |
2 |
public static final int |
CTRL_ALT |
10 |
public static final int |
CTRL_SHIFT |
3 |
public static final int |
DOUBLE |
512 |
public static final int |
DOWN |
4096 |
public static final int |
DRAG |
8192 |
public static final int |
LEFT |
16 |
public static final int |
MAC_COMMAND |
20 |
public static final int |
MIDDLE |
8 |
public static final int |
MODE_MASK |
61440 |
public static final int |
RIGHT |
4 |
public static final int |
SHIFT |
1 |
public static final int |
SINGLE |
256 |
public static final int |
UP |
16384 |
public static final int |
WHEEL |
32 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final float |
AMPLITUDE_MAX |
1.0f |
private static final float |
AMPLITUDE_PRECISION |
0.009999999776482582f |
private static final float |
AMPLITUDE_VALUE |
0.5f |
static final java.lang.String |
COLLECTION |
"collection" |
static final java.lang.String |
FF |
"ff" |
private static final int |
FPS_MAX |
30 |
static final java.lang.String |
NEXT |
"next" |
static final java.lang.String |
PAUSE |
"pause" |
private static final float |
PERIOD_MAX |
1.0f |
private static final float |
PERIOD_PRECISION |
0.0010000000474974513f |
private static final float |
PERIOD_VALUE |
0.5f |
static final java.lang.String |
PLAY |
"play" |
static final java.lang.String |
PREVIOUS |
"prev" |
private static final int |
RADIUS_MAX |
19 |
private static final int |
RADIUS_VALUE |
3 |
static final java.lang.String |
REWIND |
"rewind" |
static final java.lang.String |
SAVE |
"save" |
private static final float |
SCALE_MAX |
2.0f |
private static final float |
SCALE_PRECISION |
0.009999999776482582f |
private static final float |
SCALE_VALUE |
1.0f |
static final java.lang.String |
VECTOR |
"vector" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
DEFAULT_BASIS |
"3-21G**" |
private static final java.lang.String |
DEFAULT_CHARGE |
"0" |
private static final java.lang.String |
DEFAULT_METHOD |
"HF" |
private static final java.lang.String |
DEFAULT_MULT |
"1" |
private static final java.lang.String |
DFT_LIST |
"LSDA BLYP BP86 BPW91 OLYP OP86 OPW91 PBEPBE VSXC HCTH93 NCTH147 HCTH407 TPSSTPSS B3LYP B3PW91" |
private static final java.lang.String |
NOBASIS_LIST |
"AM1 PM3 CNDO INDO MNDO MINDO3 ZINDO UFF AMBER DREIDING Huckel" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
aboutAction |
"about" |
private static final java.lang.String |
atomsetchooserAction |
"atomsetchooser" |
static final java.lang.String |
chemFileProperty |
"chemFile" |
private static final java.lang.String |
closeAction |
"close" |
private static final java.lang.String |
consoleAction |
"console" |
private static final java.lang.String |
copyImageActionProperty |
"copyImage" |
private static final java.lang.String |
copyScriptActionProperty |
"copyScript" |
private static final java.lang.String |
creditsAction |
"credits" |
private static final java.lang.String |
EDITOR_WINDOW_NAME |
"ScriptEditor" |
private static final java.lang.String |
editorAction |
"editor" |
private static final java.lang.String |
exitAction |
"exit" |
private static final java.lang.String |
exportActionProperty |
"export" |
private static final java.lang.String |
FILE_OPEN_WINDOW_NAME |
"FileOpen" |
private static final java.lang.String |
gaussianAction |
"gauss" |
private static final java.lang.String |
newAction |
"new" |
private static final java.lang.String |
newwinAction |
"newwin" |
private static final java.lang.String |
openAction |
"open" |
private static final java.lang.String |
openmolAction |
"openmol" |
private static final java.lang.String |
openpdbAction |
"openpdb" |
private static final java.lang.String |
openurlAction |
"openurl" |
private static final java.lang.String |
pasteClipboardActionProperty |
"pasteClipboard" |
private static final java.lang.String |
povrayActionProperty |
"povray" |
private static final java.lang.String |
printActionProperty |
"print" |
private static final java.lang.String |
recentFilesAction |
"recentFiles" |
private static final java.lang.String |
resizeAction |
"resize" |
private static final java.lang.String |
SCRIPT_WINDOW_NAME |
"ScriptWindow" |
private static final java.lang.String |
SURFACETOOL_WINDOW_NAME |
"SurfaceToolWindow" |
private static final java.lang.String |
surfaceToolActionProperty |
"surfaceTool" |
private static final java.lang.String |
toWebActionProperty |
"toweb" |
private static final java.lang.String |
uguideAction |
"uguide" |
private static final java.lang.String |
WEB_MAKER_WINDOW_NAME |
"JmolWebPageMaker" |
private static final java.lang.String |
whatsnewAction |
"whatsnew" |
private static final java.lang.String |
writeActionProperty |
"write" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
MAX_FILES |
10 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
BORDERSIZE |
10 |
private static final int |
STATUSSIZE |
10 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
ALL_BUTTONS |
"Editor Variables Clear History State UndoRedo Close Font Help" |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final java.lang.String |
alterHelp |
"ALTER IA newval (nuclear charge of atom IA)\n IA IB newval (bond length IA-IB)\n IA IB IC newval (valence angle IA-IB-IC)\n IA IB IC ID newval (dihedral IA-IB-IC-IC)\n \nExamples:\n ALTER 10 14. [change atom 10 to Si (Z = 14)]\n ALTER 2 5 1.69 [change R(5-8) bond to 1.69A]\n ALTER 1 2 3 4 180. [change 1-2-3-4 dihedral\n angle to 180 degrees]\n \nNote that \'ALTER 1 2 3 4 180.\' changes ONLYthe 1-2-3-4 dihedral (often giving unphysicaldistorted geometry). Use \'TWIST 1 2 3 4 180.\'to form a proper torsional rotamer.\n \nUse VFILE to determine which angles can besafely ALTERed. Otherwise, the coordinatesmay be re-defined, with unexpected effectson other variables." |
protected static final java.lang.String |
chbHelp |
"3CHB IA IB :Lig (form 3-center hyperbond\n IA-IB-Lig to ligand :Lig)\nExamples:\n SHOW W(:NH3)3 (normal-valent W triammine)\n 3CHB 1 2 :NH3 (hyperbonded N-W-N triad)\n SHOW H2O (water monomer)\n 3CHB 2 3 :OH2 (H-bonded water dimer)\n" |
protected static final java.lang.String |
clipHelp |
"CLIP IA IB (erase bond between IA, IB)\n \nExample:\n CLIP 1 2 [erase bond between atoms 1,2]\n \nNote that CLIP takes no account of electronicrequirements for a Lewis-compliant model." |
protected static final java.lang.String |
DEFAULT_PARAMS |
"PLOT CMO DIPOLE STERIC" |
static final int |
DIALOG_CONFIG |
0 |
static final int |
DIALOG_LIST |
-1 |
static final int |
DIALOG_MODEL |
10 |
static final int |
DIALOG_RUN |
20 |
static final int |
DIALOG_SEARCH |
40 |
static final int |
DIALOG_VIEW |
30 |
protected static final java.lang.String |
fuseHelp |
"FUSE IA,IB (remove IA,IB and join the two\n \'dangling\' sites by a new bond)\n \nAllowed parameter:\n .r = ring-forming (conformational search)\n \nExamples:\n FUSE 4 12 [remove atoms 4, 12 and draw a new\n bond between resulting radical centers\n (e.g., 3-11), with no geometry change]\n FUSE.r 4 12 [similar, but a conformational\n search is performed to find the most\n suitable ring-closing geometry]\n \nNote that IA, IB must have similar valency, so\nthe resulting structure remains Lewis-compliant.\n" |
protected static final java.lang.String |
helpModel |
"NBOModel COMMAND SYNTAX\n \nCommand verbs are case-insensitive and canbe abbreviated by the leading unique characters.Arguments are separated by commas or spaces.Parameters are attached to the command verbafter a dot (viz., DRAW.ap MODEL). Argumentsand parameters are case-insensitive, exceptfor chemical formulas and group acronyms.Use \'HELP <command>\' (e.g., \'HELP SHOW\') forfurther specifics of each COMMAND type.\n \nCOMMAND(.t) arguments\n------------------------------------\nALTER IA [IB IC ID] newvalue\nCLIP IA IB\nDRAW filename\nFUSE(.R) IA IB\nHELP command\nLINK IA IB\nMUTATE IA formula\nREBOND IA symtype\nROTATE AXIS angle\nSAVE.t filename\nSHOW formula\nSWITCH IA IB\nSYMMETRY\nTRANSLATE AXIS shift\nTWIST IA IB IC ID newvalue\nUNIFY CFI1 CFI2 IA1 IB1 IA2 IB2 dist\nUSE.t filename\nVALUE IA [IB IC ID]\n3CHB IA IB :Ligand\n" |
protected static final java.lang.String |
linkHelp |
"LINK IA IB (draw a \'bond\' between atoms IA, IB)\nExamples:\n LINK 3 17 [draws a \'bond: between atoms 3-17\nNote that this command (unlike FUSE) takes no\naccount of chemical reasonability.\n" |
protected static final java.lang.String |
mutateHelp |
"MUTATE IA formula (replace atom IA by the group\n of specified chemical \'formula\',\n if both are of consistent valency)\n \nExample:\n MUTATE 4 CH3 [remove monovalent atom 4 and\n attach a methyl (CH3) radical in its\n place, preserving valence consistency]\n" |
protected static final java.lang.String |
rebondHelp |
"REBOND IA symtype (select a new Lewis valence\n isomer of \'symtype\' symmetry\n at transition metal atom IA)\n \nAllowed \'symtype\' parameters (TM species only):\n \n ML6 bonding: c3vo (\'Outer\' C3v [default])\n c3vi (\'Inner\' C3v symmetry)\n c5vo (\'Outer\' C5v symmetry)\n c5vi (\'Inner\' C5v symmetry)\n \n ML5 bonding: c4vo (\'Outer\' C4v [default])\n c4vi (\'Inner\' C4v symmetry)\n \n ML4 bonding: td (Td symmetry [default])\n c3vi (\'Inner\' C3v symmetry)\n c4v (C4v symmetry)\nExample:\n SHOW WH6 [Tungsten hexahydride, in ideal\n \'c3vo\' isomer geometry]\n REBOND 2 c5vi [reform preceding WH6 isomer\n to alternative \'inner C5v\'\n geometry at TM atom 2]\n" |
protected static final java.lang.String |
saveHelp |
"SAVE.t filename (save current model as file\n \'filename\' of type \'t\' extension)\n \nParameters: \n .v = valence coordinate VFILE ([.vfi])\n .c = cartesian coordinate CFILE (.cfi)\n .adf = ADF input file (.adf)\n .g = Gaussian input file (.gau)\n .gms = GAMESS input file (.gms)\n .jag = Jaguar input file (.jag)\n .mm = MM2 molecular mechanics file (.mm2)\n .mnd = AM1/MINDO-type input file (.mnd)\n .mp = Molpro input file (.mp)\n .nw = NWChem input file (.nw)\n .orc = Orca input file (.orc)\n .pqs = PQS input file (.pqs)\n .qc = Q-Chem input file (.qc)\nExample:\n SAVE.G job [save Gaussian-type \'job.gau\' file]\n" |
protected static final java.lang.String |
searchHelp |
" NBOSearch: COMMAND SYNTAX AND PROGRAM OVERVIEW\nPROGRAM OVERVIEW:\nFollow menu prompts through the decision tree to the keyword module and datum of interest. Each menu appears with \'Current [V-list] settings\' and a scrolling list of output values. All output lines are also echoed to an external NBOLOG$$.DAT file and error messages go to NBOERR$$.DAT for later reference.\n\nGENERAL \'M V n\' COMMAND SYNTAX:\nNBOSearch user responses generally consist of \'commands\' \n(replies to prompts)\nof the form \'M (V (n))\', where\n M (integer) = [M]enu selection from displayed items\n V (character) = [V]ariable data type to be selected\n [J](obname)\n [B](asis)\n [O](rbital number)\n [A](tom number, in context)\n [U](nit number)\n [d](onor NBO number)\n [a](cceptor NBO number, in context)\n n (integer) = [n]umber of the desired O/A/U/d/a selection\nResponses may also be of simple \'M\', \'V\', or \'Vn\' form , where\n \'M\' : selects a numbered menu choice (for current [V] choices)\n \'V\' : requests a menu of [V] choices\n \'Vn\': selects [V] number \'n\' (and current [S])\nNote that [V]-input is case-insensitive, so \'A\' (or \'a\') is interpreted as \'atom\' or \'acceptor\' according to context. Note also that \'Vn\' commands can be\ngiven in separated \'V n\' form. Although not explicitly included in each active [V]-select list, the \'H\'(elp) key is recognized at each prompt. For NRT search (only), variable [V] may also be \'R\' (for \'resonance structure\' and A\' (for \'interacting atom\'). Current A (atom) and A\' (interacting atom) values determine the current A-A\' \'bond\' selection small fractional bond order.)\n\nEXAMPLES:\n \'2 a7\' : requests menu item 2 for atom 7 (if A-select active)\n \'3 o2\' : requests menu item 3 for orbital 2 \n" |
protected static final java.lang.String |
showHelp |
"SHOW <formula> (create a molecule model from\n its \'formula\')\nSHOW <acceptor> <donor-1> <donor-2>...\n (create supramolecular model from\n radical \'acceptor\' and ligand\n \'donor-i\' formulas)\nThe chemical \'formula\' is a valid Lewis-typeline formula, similar to textbook examples.Use colons to denote multiple bonds (C::O doublebond, C:::N triple bond, etc.) and parenthesesto identify repeat units or side groups.Atomic symbols in the range H-Cf (Z = 1-98)and repetition numbers 1-9 are allowed.Chemical formula symbols are case-sensitive.\n \nLigated free radicals (with free-valent acceptorsites) can also be formed in specified hapticitymotifs with chosen molecular ligands. Radical<acceptor> and ligand <donor-i> monomers arespecified by valid line formulas, with eachligand <donor> formula preceded by a number ofcolons (:) representing the number of 2e sitesin the desired ligand denticity (such as \':NH3\'for monodentate ammine ligand, \'::NH2CH::CH2\'for bidentate vinylamine ligand, or \':::Bz\' fortridentate benzene ligand). Each such ligationsymbol may be prefixed with a stoichiometriccoefficient 2-9 for the number of ligands.\n \nIn both molecular and supramolecular formulas,valid transition metal duodectet structuresare also accepted. For d-block molecular species,the default idealized metal hybridization isomercan be altered with the REBOND command.For d-block species one can also includecoordinative ligands (:Lig), enclosed inparentheses and preceded by a colon symbol.Formal \'ylidic\' charges are allowed only foradjacent atom pairs (e.g., dative pi-bonds).\n \nModels may also be specified by using acronymsfrom a library of pre-formed species (manyat B3LYP/6-31+G* optimized level). Each suchacronym can also be used as a monovalent ligandin MUTATE commands, as illustrated below.\n \nCommon cyclic aromatic species\n Bz C6H6 benzene\n A10R2L C10H8 naphthalene\n A14R3L C14H12 anthracene\n A18R4L C18H16 tetracene\n A22R5L C22H20 pentacene\n A14R3 C14H10 phenanthrene\n A14R4 C14H12 chrysene\n A16R4 C16H10 pyrene\n A18R4 C18H12 triphenylene\n A20R5 C20H12 benzopyrene\n A20R6 C20H10 corannulene\n A24R7 C24H12 coronene\n A32R10 C32H14 ovalene\nCommon cyclic saturated species\n R6C C6H12 cyclohexane (chair)\n R6B \' \' (boat t.s.) \n R6T \' \' (twist-boat)\n R5 C5H10 cyclopentane\n R4 C4H8 cyclobutane\n R3 C3H6 cyclopropane\n RB222 [2,2,2]bicyclooctane\n RB221 [2,2,1]bicycloheptane (norbornane)\n RB211 [2,1,1]bicyclohexane\n RB111 [1,1,1]bicyclopentane (propellane)\n R5S spiropentane\n RAD adamantane\n \nCommon inorganic ligands\n acac acetylacetonate anion (bidentate)\n bipy 2,2\"\"-bipyridine (bidentate)\n cp cyclopentadienyl anion (:, ::, :::)\n dien diethylenetriamine (tridentate)\n dppe 1,2-bis(diphenylphosphino)ethane\n (bidentate)\n edta ethylenediaminetetraacetate anion\n (hexadentate)\n en ethylenediamine (bidentate)\n phen 1,10-phenanthroline (bidentate)\n tren tris(2-aminoethyl)amine (tetradentate)\n trien triethylenetetramine (tetradentate)\n \nPeptide fragments (HC::ONHCH2R)\n GLY glycine\n ALA alanine\n VAL valine\n LEU leucine\n ILE isoleucine\n PRO proline\n PHE phenylalanine\n TYR tyrosine\n TRP tryptophan\n SER serine\n THR threonine\n CYS cysteine\n MET methionine\n ASN asparagine\n GLN glutamine\n ASP aspartate\n GLU glutamate\n LYS lysine\n ARG argenine\n HIS histidine\n \nNucleic acid fragments\n NA_G guanine\n NA_C cytosine\n NA_A adenine\n NA_T thymine\n NA_U uracil\n NA_R ribose backbone fragment\n \nIn addition, the SHOW command recognizes\n\'D3H\' (trigonal bipyramid) or \'D4H\' (octahedral)\nspecies, created as SF5, SF6, respectively.\n \n(\'SHOW\' and \'FORM\' are synonymous commands.) \nMolecular examples:\n SHOW CH3C::OOH acetic acid\n SHOW CH3(CH2)4CH3 n-hexane\n SHOW WH2(:NH3)2 diammine of WH2\n SHOW NA_C cytosine\n SHOW CH4 methane\n MUTATE 3 RAD methyladamantane\n SHOW ALA alanine\n MUTATE 7 ALA ala-ala\n MUTATE 17 ALA ala-ala-ala, etc.\nSupramolecular examples:\n SHOW CH3 :H2O hydrated methyl radical\n SHOW Cr 2:::Bz dibenzene chromium\n SHOW CrCl3 2:H2O :NH3\n SHOW Cr 3::acac\n SHOW Cr ::::::edta\n" |
protected static final java.lang.String |
switchHelp |
"SWITCH IA IB [switch atoms IA, IB (and\n attached groups) to invert\n configuration at an attached\n stereocenter.]\nExample:\n SHOW ALA (L-alanine)\n SWITCH 6 7 (switch to D-alanine)\n" |
protected static final java.lang.String |
symHelp |
"SYMMETRY (determine point group)\n \nNote that exact point-group symmetry is amathematical idealization. NBOModel recognizes\'effective\' symmetry, adequate for chemicalpurposes even if actual atom positions deviateslightly (say, ~0.02A) from idealized symmetry." |
protected static final java.lang.String |
twistHelp |
"TWIST IA IB IC IC newval\n IA-IB-IC-ID angle to \'newval\')\n \nExample:\n SHOW C2H6 ethane (staggered)\n TWIST 1 2 3 4 0. ethane (eclipsed)\n" |
protected static final java.lang.String |
unifyHelp |
"UNIFY CFI-1 CFI-2 IA1 IB1 IA2 IB2 dist\n (form a complex from molecules in\n cfiles CFI-1, CFI-2, chosen to have\n linear IA1-IB1-IB2-IA2 alignment\n and IA1-IA2 separation \'dist\')\n \nCFI-1 and CFI-2 are two CFILES (previously\ncreated with SAVE.C); IA1, IB1 are two atoms\nof CFI-1 and IA2, IB2 are two atoms of CFI-2\nthat will be \'unified\' in linear IA1-IB1-IB2-IA2\narrangement, with specified IA1-IA2 \'dist\'.\n \nExample:\n SHOW H2C::O (create formaldehyde)\n SAVE.C H2CO (save H2CO.cfi)\n SHOW NH3 (create ammonia)\n SAVE.C NH3 (save NH3.cfi)\n UNIFY H2CO.cfi NH3.cfi 2 3 1 2 4.3\n (creates H-bonded complex)\n" |
protected static final java.lang.String |
useHelp |
"USE.t filename (use file \'filename\' of type \'t\'\n to initiate a modeling session)\n \n\'t\' parameters: \n .v = valence coordinate VFILE ([.vfi])\n .c = cartesian coordinate CFILE (.cfi)\n .a = NBO archive file (.47)\n .adf = ADF input file (.adf)\n .g = Gaussian input file (.gau)\n .gms = GAMESS input file (.gms)\n .jag = Jaguar input file (.jag)\n .l = Gaussian log file (.log)\n .mp = Molpro input file (.mp)\n .nw = NWChem input file (.nw)\n .orc = Orca input file (.orc)\n .pqs = PQS input file (.pqs)\n .qc = Q-Chem input file (.qc)\nExample:\n USE.G ACETIC (use Gaussian-type ACETIC.GAU\n input file to start session)\n" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
ALTER |
4 |
private static final int |
CLIP |
2 |
protected static final int |
CONFIRM_SAVE |
0 |
protected static final int |
CONFIRM_VIEWOUTPUT |
1 |
private static final java.lang.String |
INPUT_FILE_EXTENSIONS |
";adf;cfi;gau;gms;jag;mm2;mnd;mp;nw;orc;pqs;qc;vfi;g09;com" |
private static final java.lang.String |
LOAD_SCRIPT |
";set zoomlarge false;zoomTo 0.5 {*} 0;" |
private static final int |
MUTATE |
1 |
protected static final int |
VALUE |
5 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final java.lang.String |
CHOOSE_DESCRIPTION |
"$CHOOSE Keylist - Edit lone pairs and bond orders" |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
BEND_VIS |
8 |
private static final int |
CMO_VIS |
9 |
private static final int |
E2_VIS |
7 |
private static final int |
KEYWD_BAS1BAS2 |
11 |
private static final int |
KEYWD_BEND |
3 |
private static final int |
KEYWD_CMO |
8 |
private static final int |
KEYWD_DIPOLE |
9 |
private static final int |
KEYWD_E2PERT |
4 |
private static final int |
KEYWD_NBO |
2 |
private static final int |
KEYWD_NLMO |
5 |
private static final int |
KEYWD_NPA |
1 |
private static final int |
KEYWD_NRT |
6 |
private static final int |
KEYWD_OPBAS |
10 |
private static final int |
KEYWD_STERIC |
7 |
private static final int |
MO_VIS |
8 |
private static final int |
NBO_VIS |
7 |
private static final int |
NLMO_VIS |
7 |
private static final int |
NPA_VIS |
11 |
private static final int |
STERIC_VIS |
8 |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final int |
VIEW_STATE_CAMERA |
3 |
protected static final int |
VIEW_STATE_MAIN |
0 |
protected static final int |
VIEW_STATE_PLANE |
1 |
protected static final int |
VIEW_STATE_VECTOR |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
QUEUE_MAX |
10 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final int |
MODE_ERR |
-1 |
static final int |
MODE_ERROR |
-1 |
static final int |
MODE_IMAGE |
88 |
static final int |
MODE_MODEL |
1 |
static final int |
MODE_RAW |
0 |
static final int |
MODE_RUN |
20 |
static final int |
MODE_SEARCH |
40 |
static final int |
MODE_SEARCH_LIST |
46 |
static final int |
MODE_SEARCH_SELECT |
47 |
static final int |
MODE_SEARCH_VALUE |
45 |
static final int |
MODE_VIEW |
30 |
static final int |
MODE_VIEW_LIST |
33 |
Modifier and Type | Constant Field | Value |
---|---|---|
static final int |
CIRCLE_FRACTION |
3 |
static final int |
DEGREES |
0 |
static final int |
GRADIANS |
2 |
static final int |
RADIANS |
1 |
static final int |
UNITS_PI |
4 |
Modifier and Type | Constant Field | Value |
---|---|---|
private static final long |
serialVersionUID |
1L |
Modifier and Type | Constant Field | Value |
---|---|---|
static final java.lang.String |
chemappsPath |
"http://chemapps.stolaf.edu/jmol/jsmol" |
private static final int |
IN_JMOL |
1 |
private static final int |
STAND_ALONE |
0 |