B C D E F G K L M O P R S T U V W
BasicFilter-class | Filter results fetched from the Ensembl database |
buildQuery | Basic usage of an Ensembl based annotation database |
buildQuery-method | Basic usage of an Ensembl based annotation database |
cdsBy | Retrieve annotation data from an Ensembl based package |
cdsBy-method | Retrieve annotation data from an Ensembl based package |
column | Filter results fetched from the Ensembl database |
column-method | Filter results fetched from the Ensembl database |
columns-method | Integration into the AnnotationDbi framework |
condition | Filter results fetched from the Ensembl database |
condition-method | Filter results fetched from the Ensembl database |
condition<- | Filter results fetched from the Ensembl database |
condition<--method | Filter results fetched from the Ensembl database |
dbconn | Basic usage of an Ensembl based annotation database |
dbconn-method | Basic usage of an Ensembl based annotation database |
disjointExons-method | Retrieve annotation data from an Ensembl based package |
end-method | Filter results fetched from the Ensembl database |
EnsDb | Connect to an EnsDb object |
EnsDb-class | Basic usage of an Ensembl based annotation database |
ensDbFromAH | Generating a Ensembl annotation package from Ensembl |
ensDbFromGff | Generating a Ensembl annotation package from Ensembl |
ensDbFromGRanges | Generating a Ensembl annotation package from Ensembl |
ensDbFromGtf | Generating a Ensembl annotation package from Ensembl |
ensemblVersion | Basic usage of an Ensembl based annotation database |
ensemblVersion-method | Basic usage of an Ensembl based annotation database |
EntrezidFilter | Constructor functions for filter objects |
EntrezidFilter-class | Filter results fetched from the Ensembl database |
ExonidFilter | Constructor functions for filter objects |
ExonidFilter-class | Filter results fetched from the Ensembl database |
ExonrankFilter | Constructor functions for filter objects |
ExonrankFilter-class | Filter results fetched from the Ensembl database |
exons | Retrieve annotation data from an Ensembl based package |
exons-method | Retrieve annotation data from an Ensembl based package |
exonsBy | Retrieve annotation data from an Ensembl based package |
exonsBy-method | Retrieve annotation data from an Ensembl based package |
exonsByOverlaps-method | Retrieve annotation data from an Ensembl based package |
fetchTablesFromEnsembl | Generating a Ensembl annotation package from Ensembl |
fiveUTRsByTranscript-method | Retrieve annotation data from an Ensembl based package |
GenebiotypeFilter | Constructor functions for filter objects |
GenebiotypeFilter-class | Filter results fetched from the Ensembl database |
GeneidFilter | Constructor functions for filter objects |
GeneidFilter-class | Filter results fetched from the Ensembl database |
GenenameFilter | Constructor functions for filter objects |
GenenameFilter-class | Filter results fetched from the Ensembl database |
genes | Retrieve annotation data from an Ensembl based package |
genes-method | Retrieve annotation data from an Ensembl based package |
getGeneRegionTrackForGviz | Utility functions |
getGeneRegionTrackForGviz-method | Utility functions |
getGenomeFaFile | Functionality related to DNA/RNA sequences |
getGenomeFaFile-method | Functionality related to DNA/RNA sequences |
GRangesFilter | Constructor functions for filter objects |
GRangesFilter-class | Filter results fetched from the Ensembl database |
keys-method | Integration into the AnnotationDbi framework |
keytypes-method | Integration into the AnnotationDbi framework |
lengthOf | Calculating lengths of features |
lengthOf-method | Calculating lengths of features |
listColumns | Basic usage of an Ensembl based annotation database |
listColumns-method | Basic usage of an Ensembl based annotation database |
listEnsDbs | List EnsDb databases in a MySQL server |
listGenebiotypes | Basic usage of an Ensembl based annotation database |
listGenebiotypes-method | Basic usage of an Ensembl based annotation database |
listTables | Basic usage of an Ensembl based annotation database |
listTables-method | Basic usage of an Ensembl based annotation database |
listTxbiotypes | Basic usage of an Ensembl based annotation database |
listTxbiotypes-method | Basic usage of an Ensembl based annotation database |
makeEnsembldbPackage | Generating a Ensembl annotation package from Ensembl |
makeEnsemblSQLiteFromTables | Generating a Ensembl annotation package from Ensembl |
mapIds-method | Integration into the AnnotationDbi framework |
metadata | Basic usage of an Ensembl based annotation database |
metadata-method | Basic usage of an Ensembl based annotation database |
organism | Basic usage of an Ensembl based annotation database |
organism-method | Basic usage of an Ensembl based annotation database |
print-method | Filter results fetched from the Ensembl database |
promoters | Retrieve annotation data from an Ensembl based package |
promoters-method | Retrieve annotation data from an Ensembl based package |
returnFilterColumns | Basic usage of an Ensembl based annotation database |
returnFilterColumns-method | Basic usage of an Ensembl based annotation database |
returnFilterColumns<- | Basic usage of an Ensembl based annotation database |
returnFilterColumns<--method | Basic usage of an Ensembl based annotation database |
runEnsDbApp | Search annotations interactively |
select | Integration into the AnnotationDbi framework |
select-method | Integration into the AnnotationDbi framework |
SeqendFilter | Constructor functions for filter objects |
SeqendFilter-class | Filter results fetched from the Ensembl database |
seqinfo | Basic usage of an Ensembl based annotation database |
seqinfo-method | Basic usage of an Ensembl based annotation database |
seqlevels | Basic usage of an Ensembl based annotation database |
seqlevels-method | Basic usage of an Ensembl based annotation database |
seqlevels-method | Filter results fetched from the Ensembl database |
seqlevelsStyle | Support for other than Ensembl seqlevel style |
seqlevelsStyle-method | Support for other than Ensembl seqlevel style |
seqlevelsStyle<- | Support for other than Ensembl seqlevel style |
seqlevelsStyle<--method | Support for other than Ensembl seqlevel style |
SeqnameFilter | Constructor functions for filter objects |
SeqnameFilter-class | Filter results fetched from the Ensembl database |
seqnames-method | Filter results fetched from the Ensembl database |
SeqstartFilter | Constructor functions for filter objects |
SeqstartFilter-class | Filter results fetched from the Ensembl database |
SeqstrandFilter | Constructor functions for filter objects |
SeqstrandFilter-class | Filter results fetched from the Ensembl database |
show | Basic usage of an Ensembl based annotation database |
show-method | Basic usage of an Ensembl based annotation database |
show-method | Filter results fetched from the Ensembl database |
start-method | Filter results fetched from the Ensembl database |
strand-method | Filter results fetched from the Ensembl database |
supportedSeqlevelsStyles | Support for other than Ensembl seqlevel style |
supportedSeqlevelsStyles-method | Support for other than Ensembl seqlevel style |
SymbolFilter | Constructor functions for filter objects |
SymbolFilter-class | Filter results fetched from the Ensembl database |
threeUTRsByTranscript-method | Retrieve annotation data from an Ensembl based package |
toSAF | Retrieve annotation data from an Ensembl based package |
toSAF-method | Retrieve annotation data from an Ensembl based package |
transcripts | Retrieve annotation data from an Ensembl based package |
transcripts-method | Retrieve annotation data from an Ensembl based package |
transcriptsBy | Retrieve annotation data from an Ensembl based package |
transcriptsBy-method | Retrieve annotation data from an Ensembl based package |
transcriptsByOverlaps-method | Retrieve annotation data from an Ensembl based package |
TxbiotypeFilter | Constructor functions for filter objects |
TxbiotypeFilter-class | Filter results fetched from the Ensembl database |
TxidFilter | Constructor functions for filter objects |
TxidFilter-class | Filter results fetched from the Ensembl database |
updateEnsDb | Basic usage of an Ensembl based annotation database |
updateEnsDb-method | Basic usage of an Ensembl based annotation database |
useMySQL | Use a MySQL backend |
useMySQL-method | Use a MySQL backend |
value | Filter results fetched from the Ensembl database |
value-method | Filter results fetched from the Ensembl database |
value<- | Filter results fetched from the Ensembl database |
value<--method | Filter results fetched from the Ensembl database |
where | Filter results fetched from the Ensembl database |
where-method | Filter results fetched from the Ensembl database |